Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41020 414 / 5e-136 MYB myb family transcription factor (.1) AT4G32730 53 / 7e-07 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G02320 47 / 5e-05 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT3G09370 45 / 0.0002 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168900 [exp] 946 / 0 AT5G41020 398 / 1e-130 myb family transcription factor (.1) Potri.006G241700 [exp] 52 / 1e-06 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 51 / 2e-06 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.005G074500 [exp] 44 / 0.0002 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.006G085600 [exp] 43 / 0.0008 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022926 [exp] 453 / 1e-151 AT5G41020 359 / 1e-117 myb family transcription factor (.1) Lus10041714 [exp] 427 / 1e-141 AT5G41020 337 / 1e-108 myb family transcription factor (.1) Lus10024036 [exp] 418 / 4e-138 AT5G41020 336 / 3e-108 myb family transcription factor (.1) Lus10022932 [exp] 140 / 7e-38 AT5G41020 112 / 7e-29 myb family transcription factor (.1) Lus10011687 [exp] 50 / 9e-06 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 49 / 2e-05 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 48 / 3e-05 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 47 / 4e-05 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10036472 [exp] 47 / 5e-05 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 45 / 0.0002 AT1G34670 315 / 2e-106 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G095000.1 pacid=42776481 polypeptide=Potri.015G095000.1.p locus=Potri.015G095000 ID=Potri.015G095000.1.v4.1 annot-version=v4.1 ATGGTGGGGGGGAAACAGCGTGGGAAAAAGAAAACAAAGGATGAGGATGGTTCCTTGAAAGAGGAAAGCTCTTTGAAAGATAGATTGCTTGCGAGTGGAG GGGAGAGTTTAACTCCAAGTATTGAAATTATGAAGAAGAAGAAGACGAGGAGGAGGAGTGAGAAGCATGAGGCTAGTGCTGAGGATGTTGGAGTAAGTTC TAGTCTAAGTGAGGGCAATGTAGATGTCAATAATGCAGCAGACAAGAATGAGAGGAAGAAGAAGAAGAAGGAAAAAAAGAAGAAGAAGAGCGAGGGGCAT GGGGATTGCAGTGAGATTGTTGCAGTAAGTTCTAGTCTAAGTGAGGGTAATGTAGATGTCAATAACGCAGCAGAGAAAAATGAGAAGAAGAAAAAGAAGA GCAAAAGGCATGAGGCTTGCGTTGAGGATGTTGCAGTTAGTTTAAGTGAGGGTAATATAGATGTCAATAACGCAGAAGGCAGGAATGAGAAGAAGGAGAG GAAGAGAAAATTGGAGCATGGTAACAATGAGAAAGAATCTCAAGTGGCTAGGAAGAAAAATAAGGTGAGTGAAGTAGGAGAGGTTTTGGAGGAGACCCAT ATGCGAATAGAGGATAATATGGGCTTGCAAAAGAATGTCCATGTGGATTTGGTCAGAAACTCTGAGTCAGAAGTGAGAAGAGATGGGAAAAAGAATCGAA AGGAGAAGAACAGAGAAGATAGATCAAGCACCGTTGCCCCTGTGGTTAACATCCTTGACGATAACAGAAAGGAAGAGGTGGTTGGTGTACAGAAAGGCCC TGGGAGTGAAGGTATTGCTAACATGAATAATGGGGAAGGACGGGATCGAAAGAAGGAAAAGAAGAAGAAACAGAAGAAGTATGGTGGTGGTGGTGGCGAT ACTGAGGTAATTGAAAGTGCAGCTGATGGAAAAGATGCTGGAAGAGAGGAGTCGACTGAAATTGTTCAGGACAAGGTAGAGTCTTCAAAGAAGGAGAAGA AGAAAAAGAAGAAAAGGCACAATGTTGTTCAAGAGGCTGCTTCAATTCAAATTATGGCTGAGACCATGGGCAACCAAAGCAGTGTAATAGAAAGTGATGG AGGTAATTCAAGTTCGATTAAAAATAAGGCAAGAGATGGAAAACTAAAGGTCAATGATGAGGGTGGAAAAAAAAGGAAGAAGAAGGCCAAGTCTTTGGGG AATGGTTCAAAAGAAAAAAGTAGCAAAAGAGTTACACAAATGGAGAAAGATGTCGAGACTACTGGTCCATCAGAAAAATCTTCATCGAAAGCGACATCGA AGAGAGTAAGTTTTTGTGAAGATGTAGAGGTTTTCCCTTCATCTGATGGTCCTAGTGATGAGAAGGCTGTTGGGGAAGACGGCTTAGTGCGAGGGAAGCG GTTCTCACACGAGGAAGATGAGATGGTTAAAGAAGCTGTTTTAAACTATATCGATGTTCACGGTTTAGGTGCAGAAGGTCTAAACATGGTGCTGAATTGC AAAAAGCACCCTGCAATTGTACATTGTTGGAAGGAAATAGGGGCGGCCTTACCTTGGAGGCCTCGTCAGAGTGTATATCATCGAGCCCATATACTGTTTG AAAGGGGCCAGAATTCTTCTTGGACCCCAGAAGAGTATGAACTTATCCGGAAGTTCCATGAAAAACACGGTTCAGATTGGAAGACACTGGCAGAAGCCCT GGGAAAACATAGGTTTCATGTAAAGGATACGTGGCGGAGAATAAAACTGATCAATATGAAGAAAGGAAAATGGTCCCAGGACGAGTACCAGTCTTTATTT GATTTTGTGAATTTGGATCTGCGCTTGAAAGCTTTTGAAGAAAGGAAAACAAAGCATGGGATGTTACGAGATAATATTAGCTGGACAGCAATTAGCGAGA GGTTAGAAACTAGGACTGATGCTCTCTGCTGCCAAAAATGGTATGACCAGTTAACATCACCTATGGTAGCTGAAGGTAAATGGCTTGATACAGATGACTA TCGGCTGCTGATGGAGCTCTACGACTTGGATGCTTGCTGCATGGAGGATGTTGACTGGGACAATCTTCTAGAGCACAGGTCTGGAGATCTATGCCGGAAG CGATGGAACCAAATGGTGAAACACCTTGGTGACCATCGTAACAAGTCATTTGCTGACCAAGTTGACGTTCTAATTAAGCGGTACTGTCCTGATGTGCTTG AAGCAAGAGAAGCCTACAACAGCAAACCTGCAGTTCCTTGA
AA sequence Show only first row Show all	>Potri.015G095000.1 pacid=42776481 polypeptide=Potri.015G095000.1.p locus=Potri.015G095000 ID=Potri.015G095000.1.v4.1 annot-version=v4.1 MVGGKQRGKKKTKDEDGSLKEESSLKDRLLASGGESLTPSIEIMKKKKTRRRSEKHEASAEDVGVSSSLSEGNVDVNNAADKNERKKKKKEKKKKKSEGH GDCSEIVAVSSSLSEGNVDVNNAAEKNEKKKKKSKRHEACVEDVAVSLSEGNIDVNNAEGRNEKKERKRKLEHGNNEKESQVARKKNKVSEVGEVLEETH MRIEDNMGLQKNVHVDLVRNSESEVRRDGKKNRKEKNREDRSSTVAPVVNILDDNRKEEVVGVQKGPGSEGIANMNNGEGRDRKKEKKKKQKKYGGGGGD TEVIESAADGKDAGREESTEIVQDKVESSKKEKKKKKKRHNVVQEAASIQIMAETMGNQSSVIESDGGNSSSIKNKARDGKLKVNDEGGKKRKKKAKSLG NGSKEKSSKRVTQMEKDVETTGPSEKSSSKATSKRVSFCEDVEVFPSSDGPSDEKAVGEDGLVRGKRFSHEEDEMVKEAVLNYIDVHGLGAEGLNMVLNC KKHPAIVHCWKEIGAALPWRPRQSVYHRAHILFERGQNSSWTPEEYELIRKFHEKHGSDWKTLAEALGKHRFHVKDTWRRIKLINMKKGKWSQDEYQSLF DFVNLDLRLKAFEERKTKHGMLRDNISWTAISERLETRTDALCCQKWYDQLTSPMVAEGKWLDTDDYRLLMELYDLDACCMEDVDWDNLLEHRSGDLCRK RWNQMVKHLGDHRNKSFADQVDVLIKRYCPDVLEAREAYNSKPAVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	0	1
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	1.00	0.9742
AT5G48610			unknown protein		Potri.017G058701 [exp]	1.41	0.9722
AT5G43490			unknown protein		Potri.017G058500 [exp]	1.73	0.9712
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	2.00	0.9669
AT4G33740			unknown protein		Potri.001G288800 [exp]	2.23	0.9590
AT1G75335			unknown protein		Potri.013G126701 [exp]	4.35	0.9280
AT5G43490			unknown protein		Potri.017G058600 [exp]	4.58	0.9536
AT5G08450			unknown protein		Potri.018G145542 [exp]	4.69	0.9420
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	5.47	0.9422
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	6.24	0.9378

Compare expression of checked genes

Potri.015G095000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.