Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50390 865 / 0 EMB3141 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G24000 446 / 4e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 449 / 3e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 432 / 4e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 428 / 8e-141 MEF22 mitochondrial editing factor 22 (.1) AT2G03880 426 / 2e-140 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 425 / 3e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 428 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 426 / 3e-138 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 423 / 9e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 466 / 7e-157 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 467 / 2e-156 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 448 / 2e-148 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 454 / 1e-147 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 445 / 1e-146 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 444 / 7e-145 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 444 / 1e-144 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 442 / 2e-144 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 432 / 9e-143 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013389 [exp] 874 / 0 AT5G50390 785 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10008433 [exp] 728 / 0 AT5G50390 672 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013991 [exp] 457 / 9e-149 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 443 / 9e-147 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 442 / 1e-146 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 441 / 5e-146 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 443 / 8e-145 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 440 / 1e-143 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 443 / 2e-143 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 432 / 9e-141 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.015G095100.1 pacid=42775873 polypeptide=Potri.015G095100.1.p locus=Potri.015G095100 ID=Potri.015G095100.1.v4.1 annot-version=v4.1 ATGGAGGTACCATTATTGCGTTTCCAAAGTTTGACACCCGATCAAATCCAAAATCATAATAATTGTAGCTTCCCTTTTTTGTTTCCGATGTCCAAGTGTT TAGAGCAAAGAATTTTGTTTTCTGGTTATGGTTTTTCTTTCAATAAAACAAAATGGAAGAAGAACCCATTTTGGGAAATCAAGTGTTGTTCGTTAGATCG AGGGTTACAACCACGTCCAAAGCCGAAACCGGCGAAAGTTGACATTGATGTTAGTGTAAGGAGTAATTTTGTCAGAAGACCAAGTGTAGGACTTTGTAGT CAGATAGAGAAGTTAGTTTTGTTTGCTAGGTATAGAGAAGCTCTTGATCTGTTTGAGATTTTTGAGATTGAAGGTGGGTTTGATGTGGGGATTAGTACTT ATGATGCATTAGTGAATGCTTGTATAGGGTTAAGATCAGTTCGAGGAGTTAAAAGGGTGTTTAATTATATGATTGATAATGGTTTTGAGTTTGATCAGTA TATGAGGAATAGAGTGCTGCTAATGCATGTTAAGTGCGGGATGATGATTGATGCGCGGAGATTGTTTGATGAGATGCCAGAGAGGAATTTGGTTTCTTGG AATACAATTATTTCAGGGCTTGTGGATGTAGGGGATTTTATGGAGGCGTTTAGGTTGTTTTTAAATATGTGGGAGGAGTTTTCGGATGCTGGGTCGTTCA CATTTGCAGTGATGATTCGGGCATCTGCTGGGTTGGAATTGATTTCCATAGGGAGGCAATTACATGCATGCACTTTGAAGATGGGCATAGGGGATGATAT ATTTGTGTCCTGTGCTCTGATTGATATGTATAGCAAGTGTGGGAGCATTGAAGATGCTCGTTTTGTCTTTGAGGAGATGCCAGAGAAAACTACAGTAGGA TGGAATACTATCATTGCTGGTTATGCACTTCATGGCTACAGTGAGGAAGCATTGGATATGTATTATGAGATGCGTGATTCTGGTGTTAAAATGGACCACT TCACATTTTCCATGATTGTGAGAATATGTGCTAGGTTAGCTTCAGTGGAACATGCAAAGCAAGCTCATGCTGCTTTAATTCGCCATGGTTTTGGATCAGA CATTGTAGCAAATACAGCACTTGTGGACTTCTATAGCAAATGGGGAAGAATAGAAGATGCTCGGCATGTTTTTGACAAGATGGCTTCCAAAAATGTAATT TCTTGGAATGCTTTGATTGGTGGATATGGTAATCATGGTCGGGGTTCTGAGGCTGTGGAGTTGTTCGAGCAGATGATTCAAGAAAGAATGAATCCCAACC ATATCACTTTTCTTGCTGTTTTATCTGCTTGTAGCCATTCAGGTCTATCAGAACGTGGGTGGGAGATTTTTCAGTCTATGGGCAGAGATAACAGGATCAA GCCCCGAGCTATGCATTATGCATGTATGATTGAATTAATGGGTAGAGAAGGGCTTTTAGACGAAGCTTTGGCTTTGATAAGAGGTGCTCCCTTTAAGCCT ACGGCTAATATGTGGGCTGCCCTGTTAACAGCTTGTCGAGTCAACGAGAATTTTGAGCTTGGAAAATTTGCAGCTGAGAAACTTTATGGCATGGAACCAG ATAAGCTTAATAACTACATTGTGCTTTTGAATATATACAACAGTGCTGGCAACTTGAAGGAAGCTGCTGATGTTGTCCATACCTTAAAGAGGAAGGGTCT GAGAATGCGTCCTGTGTGCAGCTGGATTGAAGTTAAGAGACGGCCACACGTCTTCCTTTCTGGAGACAATCGCCATCCCCAGAGAAAGGAAATTTATCAA AAAGTGGACAAGCTGATGCTAGAAATTTCCAAGTATGGTTATGTTCCTAATCAGAAAACTTTGCTTCCTGATGTGGATGAACAAGAAGAGCGTGTACGCT TGTACCATAGTGAGAAATTGGCCATTGCTTTTGGTCTCATCAGCACTCCGTACTGGGCACCTTTGCAAATTGTGCAGGGCCACCGGATTTGTGGTGACTG TCACGAAGCAATTAAGTTGATAGCTAGGGTAACTGGAAGGGAGATTGTCATAAGGGATGCCGGCAGGTTCCATCATTTCAAACACGGGCATTGTTCTTGT GAGGACTACTGGTGA
AA sequence Show only first row Show all	>Potri.015G095100.1 pacid=42775873 polypeptide=Potri.015G095100.1.p locus=Potri.015G095100 ID=Potri.015G095100.1.v4.1 annot-version=v4.1 MEVPLLRFQSLTPDQIQNHNNCSFPFLFPMSKCLEQRILFSGYGFSFNKTKWKKNPFWEIKCCSLDRGLQPRPKPKPAKVDIDVSVRSNFVRRPSVGLCS QIEKLVLFARYREALDLFEIFEIEGGFDVGISTYDALVNACIGLRSVRGVKRVFNYMIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSW NTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVG WNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVI SWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKP TANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQ KVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLYHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSC EDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Potri.015G095100 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	8.12	0.6993	TOM1.2
AT5G08415			Radical SAM superfamily protei...		Potri.013G136000 [exp]	12.72	0.6468
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Potri.010G004600 [exp]	16.40	0.7227
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.001G093800 [exp]	21.02	0.6629
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	22.51	0.7169	Pt-FTSH4.1
AT1G22930			T-complex protein 11 (.1.2)		Potri.013G105300 [exp]	22.67	0.7199
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	25.82	0.6451
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	27.56	0.7055
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.011G107600 [exp]	30.74	0.6585
AT4G32750			unknown protein		Potri.006G241200 [exp]	42.14	0.6631

Compare expression of checked genes

Potri.015G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.