Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 3323 / 0 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 3137 / 0 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 1577 / 0 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 269 / 2e-73 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT4G32700 120 / 9e-27 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT1G79940 96 / 2e-19 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 86 / 2e-16 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT1G59760 84 / 9e-16 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G28870 76 / 8e-14 unknown protein AT1G70070 76 / 5e-13 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097300 [exp] 3619 / 0 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 1545 / 0 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 263 / 5e-71 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.018G036600 [exp] 114 / 7e-25 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.004G072200 [exp] 91 / 5e-18 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 89 / 2e-17 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.004G228700 [exp] 85 / 6e-16 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 82 / 4e-15 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 77 / 1e-13 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016048 [exp] 3440 / 0 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 3439 / 0 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 1440 / 0 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10042628 [exp] 971 / 0 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10042629 [exp] 409 / 1e-129 AT1G20960 402 / 3e-128 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10022082 [exp] 394 / 5e-119 AT1G20960 379 / 2e-114 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025169 [exp] 311 / 6e-96 AT1G20960 283 / 3e-87 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10014551 [exp] 249 / 8e-67 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10032137 [exp] 224 / 7e-59 AT3G27730 1291 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10022081 [exp] 164 / 9e-43 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF02889 [poplar] [flax] Sec63 Sec63 Brl domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.015G095500.1 pacid=42775438 polypeptide=Potri.015G095500.1.p locus=Potri.015G095500 ID=Potri.015G095500.1.v4.1 annot-version=v4.1 ATGGCGCATCTGGGTGGTGGTGCTGAGGCACACGCTCGATTCAAGCAATATGAGTATAGAGCCAATTCTAGTCTGGTACTTACTACTGATTCTCGCCCAC GTGATACTCATGAGCCTACTGGTGAACCTGAGACTCTCTGGGGCAGGATTGACCCTAGAAGTTTTGGTGACCGTGCTTATAGAGGGAGACCTGCTGAGTT AGATGAGAAGATTAACAAGGCTAAGAGGAAGAAGAAGGAGCGGGATGCTGTTTCTGAAGCTGGTCCTACTCGTCAGGCTAAGAGACGGCGCCTTAGAGAG GAGAGTGTTCTCACTTCTACTGAGGAGGGAGTTTACCAGCCCAAGACCAAGGAAACTAGAGCTGCATATGAGGCTATGCTCAGTGTAATTCAGCAGCAAT TGGGTGGTCAGCCTCTTAATATTGTCAGTGCTGCCGCTGATGAGATTTTGGCTGTTCTCAAGAATGAGTCTGTTAGGACCCAGGACAAGAGGAAGGAGAT TGAGAAGTTGTTGAATCCTATTCCCAACAATATGTTTGAACAGGTTGTTTCGATTGGTAGGCTCATCACTGACTACCAAGATGCGGGTGATGGTGCTGGG GCCTCTGTTGCTAATGGCGATGATGCCCTTGATGATGGTGTGGGTGTCGCTGTTGAGTTTGATGAAGATAATGAAGATGAGGAAGAGGATAGTGATCTGG ATATGGTGCCAGAGGAGGAAGAAGAGGAAGATGATGTGGTGGAACCAGGTGGTTCTGGGGCTATGCAAATGGGTGGCGGGATTGATGATGATGAAATGGG GGAGGCAAATGAGGGATTGAACCTTAATGTTCAGGATATTGATGCTTATTGGCTCCAAAGGAAGATTTCACTAGCTTATGAACAGCAGATTGACCCACAA CAGTGCCAGAAGCTAGCTGAAGAAGTTCTTAAGATACTTGCTGAGGGAGATGACCGGGAAGTCGAAACAAAGTTGCTGGTCCACCTCCAGTTTGATAAGT TCAGCCTCATTAAGTTTCTTTTGCGGAATAGGCTGAAGATTGTCTGGTGTACACGTTTAGCTAGGGCCAAGGACCAGGAGGAGAGGAAGCAGATTGAGGA GGAAATGATGGGTTTAGGTCCTGATTTGGCAGGAATCTTGGAGCAACTGCACGCCACAAGGGCAACTGCTAAGGAGAGGCAAAAGAACTTGGAGAAGAGT ATAAGAGAAGAGGCTCGCCGGCTGAAGGATGAGACTGGTGGAGATGGAGATAGGGATAGGAGGGGACTTGTTGATAGAGATGCAGAAAGTGGTTGGGTGA AGGGCCAGCCCCAGATGCTTGACTTGGACAGCATTGCTTTTGAACAGGGTGGCCTTTTGATGGCTAATAAAAAGTGTGATCTTCCAGTTGGTTCCTTTAA ACATCAGAAAAAGGGTTATGAAGAAGTTCATGTACCAGCGTTGAAGCAAAAGCCGATACCTCCTGATGAGAGGTTTGTCAAGATATCGGAAATGCCAGAC TGGGCTCAACCAGCTTTTAAAGGGATGCAACAGTTGAACAGGGTGCAGAGTAAAGTCTATGAGACTGCCCTTTTCAAGGCAGATAATGTACTCCTGTGTG CCCCTACTGGAGCAGGAAAAACCAATGTCGCAGTCCTCACTATACTTCAGCAAATTGCTTTGAATAGGAATCCAGATGGTTCATTCAACAATAACAATTA TAAGATAGTCTATGTGGCTCCGATGAAAGCCCTTGTGGCTGAAGTTGTGGGTAATTTGTCCAATCGTCTTCAGGAGTATGGTGTCCAGGTGAAGGAACTA AGTGGAGACCAATCACTGACCCGCCAACAAATTGAGGAAACTCAAATAATTGTGACAACCCCTGAAAAGTGGGACATTATCACCAGAAAATCTGGTGATC GCACCTATACTCAGCTGGTGAAACTACTGATTATTGATGAGATTCATCTTCTTCATGATAACAGAGGACCTGTGCTTGAGAGTATTGTTGCCAGAACTGT TAGGCAAATTGAAACCACCAAGGAACATATCCGATTGGTGGGGTTGTCAGCTACACTTCCTAATTTTGAGGATGTGGCATTGTTTCTAAGGGTTGATCTG GATAAGGGGCTCTTCCATTTTGATAATAGCTATCGGCCAGTTCCTCTGTCTCAACAGTATATTGGAATCAATATAAAGAAGCCACTGCAGAGGTTTCAGT TGATGAATGATATCTGTTACGAGAAGGTAATGGATGTAGCAGGAAAGCATCAAGTTCTTATCTTTGTCCACTCAAGGAAGGAAACAGCCAAAACAGCTCG AGCAATAAGGGATACTGCACTTGCTAATGATACTCTAAGTAGATTCTTGAGGGAGGACAGTGCAAGTCGTGAGATTCTCCAAACTCACACAGAATTGGTG AAAAGCAATGATCTCAAAGATCTTCTGCCCTATGGTTTTGCTGTTCATCATGCTGGGATGACAAGAGGTGATCGCCAACTTGTTGAGGACCTCTTTGCTG ATGGGCACGTGCAAGTATTGGTTTCTACTGCAACTCTAGCTTGGGGTGTTAACTTGCCTGCTCACACTGTGATTATCAAAGGGACTCAGATTTACAATCC AGAAAAAGGAGCATGGACTGAACTAAGTCCGCTAGATGTTATGCAGATGTTGGGTCGTGCAGGAAGGCCTCAGTATGATTCTTATGGGGAAGGGATTATC ATAACTGGCCATAGTGAGCTGCAGTACTATCTCTCTTTAATGAATCAACAACTTCCCATTGAAAGTCAGTTCATATCCAAGCTGGCTGATCAGTTGAATG CAGAAATTGTTCTTGGAACGGTTCAGAATGCTAGGGAAGCTTGCCATTGGCTTGGCTATACATACTTGTACATACGAATGTTGCGAAACCCAACACTCTA TGGCCTAGCACCAGATGTTCTTACAAGAGATATTACATTGGAGGAGAGGAGAGCTGATCTGATACATTCTGCTGCTGCTATCCTGGACAAAAATAATTTG GTCAAGTATGACAGGAAGAGTGGATATTTTCAGGGGACTGACTTGGGTCGTATTGCTAGCTACTACTATATTACTCATGGAACAATATCCACATATAACG AGCATTTGAAGCCAACAATGGGAGATATTGAGCTGTGTCGTCTATTCTCACTTAGTGAAGAATTTAAATATGTTACAGTTAGACAAGATGAGAAGATGGA ATTGGCGAAGCTTTTGGACCGTGTTCCAATTCCAATCAAGGAAAGCCTGGAGGAGCCTAGTGCCAAAATTAATGTTTTGCTGCAAGCATATATTTCTCAG CTAAAGCTTGAAGGGCTTTCATTGACATCTGACATGGTGTTCATAACTCAGAGTGCTGGCCGTCTTATGCGAGCTCTCTTTGAGATTGTCTTGAAAAGAG GATGGGCCCAGTTAGCTGAGAAGGCTTTGAACTTGTGTAAAATGGTTAATAAGAGAATGTGGAGTGTCCAGACTCCCCTTCGCCAATTCCATGGGATCCC GAATGAAATTCTGATGAAGTTGGAGAAGAAGGATTTGTCCTGGGATAGGTATTATGACCTTAAACCACAGGAGATTGGTGAACTCATCCGATTTCCCAAG ATGGGCAGAACACTGTACAAGTTCATCCACCAATTCCCAAAGCTAAACCTTGCAGCGCATGTTCAACCCATCACTCGCACCGTGTTGAGGGTTGAACTTA CAATAACAGCAGACTTTCAATGGGAGGACAATGTACATGGTTATGTGGAGCCTTTTTGGGTTATCGTGGAGGATAATGATGGTGACTACATTCTTCATCA TGAGTACTTTATGCTGAAAAAGCAGTATGTTGATGAGCACCAGGTTGTGGACCTCACACTGAATTTCACAGTTCCTATATATGAGCCATTGCCACCTCAG TATTTCATTCGTGTTGTGTCAGATAAATGGCTTGGTTCACAAACAGTTTTGCCTGTCTCTTTCAGGCATCTTATCTTGCCAGAAAAATATCCGCCTCCAA CAGAGTTGTTGGACTTGCAGCCGCTGCCTGTGACTGCATTGAGAAATCCATCATATGAAGCTCTTTATCAAGATTTTAAGCATTTTAATCCAGTGCAAAC TCAGGTCTTTACTGTTCTGTATAATACTGATGACAATGTCTTGGTTGCTGCGCCAACAGGGAGTGGGAAGACTATCTGTGCAGAGTTTGCCATACTGAGG AATCACCAAAAGGGACCTGAGAGTGTCATGCGTGCAGTGTATATTGCACCTCTTGAAGCAATTGCCAGGGAACGCTATCGTGATTGGGAGAGAAAGTTCG GTAGAGGTCTTGGCATGCGGGTTGTTGAATTGACTGGGGAAACAGCCACGGACTTGAAGCTGCTCGAAAAGGGTCAAATAATCATAAGCACCCCAGAGAA ATGGGATGCTTTGTCTAGACGCTGGAAGCAGCGGAAGTATGTGCAGCAAGTTAGTCTTTTTATCATTGATGAGCTTCACTTGATTGGGGGTCAAGGTGGT CCTGTCTTAGAGGTGATTGTCTCTAGGATGCGATACATTGCTAGTCAGATAGAGAACAAGATACGGATTGTGGCTTTGTCATCTTCTCTTGCAAATGCAA AGGATCTTGGGGAGTGGATAGGAGCTACATCTCATGGCCTATTCAATTTTCCTCCTGGTGTGCGTCCTGTGCCCCTGGAAATACACATTCAAGGTGTAGA TATAGCCAATTTTGAGGCAAGGATGCAAGCCATGACAAAACCGACATATACTTCTATTGTCCAGCATGCAAAGAATGGAAAGCCCGCTATTGTGTTTGTC CCCACAAGAAAGCATGTGCGACTTGCTGCTGTGGATCTGATGACATACTCAAGTATGGATGGTGGAGAGAAGCCACCTTTTCTGTTAAGGTCCATTGAGG AATTGGAGCCTTTCATTGGAAAGATTCAGGAAGAAATGTTGAGAGCCACTTTGCACCATGGCATTGGCTACTTGCATGAGGGCTTGAGCAGCTTGGATCA AGAAGTTGTGTCCCAACTGTTTGAAGCTGGGTGGATTCAGGTTTGTGTCATGAGTAGTTCAATGTGCTGGGGAGTGCCTTTGTCAGCACATTTGGTGGTT GTGATGGGTACTCAATACTATGACGGGCAAGAAAATGCTCACACAGATTATCCTGTTACAGATCTTCTGCAGATGATGGGCCATGCTAGCCGACCTCTTC TAGATAATTCTGGAAAGTGTGTCATCTTTTGCCACGCACCTCGTAAAGAATATTACAAGAAATTCTTATATGAAGCATTTCCCGTGGAAAGTCATTTGCA CCATTTCTTGCATGATAATTTTAATGCTGAAGTTGTTGCTGGAGTTATTGAGAACAAGCAGGATGCTGTTGATTATCTCACATGGACTTTCACGTATAGG AGGCTCACTCAGAATCCAAACTACTACAATCTCCAGGGAGTTAGTCACAGGCACCTTTCTGATCACCTTTCAGAGCTTGTTGAGAACACATTGACTGACC TAGAGAGGAGTAAATGTGTCGCTATTGAAGAGGACATGGACCTTTCTCCTCTGAATCTTGGCATGATAGCGTCTTACTATTACATCAGTTATACTACTAT TGAACGTTTTAGCTCCTCTTTGACTCCCAAAACAAAGATGAAGGGTCTTCTGGAAATCCTCTCTTCAGCCTCAGAGTATGCACAATTGCCAATAAGGCCT GGGGAGGAGGAGGTGCTTCGAAGATTAATCAATCACCAGAGGTTTTCATTTGAAAATCCTAGATACGCTGATCCACATGTGAAGGCTAATGTGTTGCTAC AAGCCCATTTCTCTAGGCAATCCGTGGGTGGGAACCTAGCATTGGACCAGCGAGAGGTGCTCCTTTCTGGCAGTAGATTGCTTCAAGCAATGGTTGATGT CATTTCGAGCAATGGTTGGTTGAGCCTTGCTCTCCTTGCAATGGAAGTTAGCCAAATGGTGACGCAAGGGATGTGGGAGCGTGATTCCATGCTTCTACAG CTTCCACACTTCACAAAGGACATGGCTAAGAGGTGTCAGGAGAACCCTGGAAAGAGTATTGAGACGGTATTTGATCTGGTGGAGATGGAAGATGATGAGA GGCGGGAGCTTCTGCAGATGTCAGATTCACAGTTGCTAGATATTGTCAGGTTTTGCAATCGATTCCCCAACATTGATATGTCTTATGAGGTGATGGATGG TGATAATGTTAGGGCAGGAGAAGACATCACTTTGCTGGTCACTCTTGAAAGGGATCTAGAGGGGAGGACAGAGGTGGGACCTGTTGATTCACCCAGGTAT CCTAAAGCCAAAGAAGAAGGGTGGTGGCTTGTTGTTGGTGATACCAAGAGCAACCAGCTGCTTGCCATCAAAAGGGTTTCCCTTCAGAGGAAGTCAAAGG TGAAGCTGGAGTTTGCTGCTCCTGCAGATACTGGAAGGAAGTCGTATACTCTCTATTTCATGTGTGATTCGTATCTTGGTTGTGACCAGGAATACAACTT CTCTGTTGATGTTGGTGAAGCAGCAGGCCCGGACGAAGACAGTGGAAGAGAGTAA
AA sequence Show only first row Show all	>Potri.015G095500.1 pacid=42775438 polypeptide=Potri.015G095500.1.p locus=Potri.015G095500 ID=Potri.015G095500.1.v4.1 annot-version=v4.1 MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAYRGRPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLRE ESVLTSTEEGVYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNNMFEQVVSIGRLITDYQDAGDGAG ASVANGDDALDDGVGVAVEFDEDNEDEEEDSDLDMVPEEEEEEDDVVEPGGSGAMQMGGGIDDDEMGEANEGLNLNVQDIDAYWLQRKISLAYEQQIDPQ QCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAKDQEERKQIEEEMMGLGPDLAGILEQLHATRATAKERQKNLEKS IREEARRLKDETGGDGDRDRRGLVDRDAESGWVKGQPQMLDLDSIAFEQGGLLMANKKCDLPVGSFKHQKKGYEEVHVPALKQKPIPPDERFVKISEMPD WAQPAFKGMQQLNRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQVKEL SGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVDL DKGLFHFDNSYRPVPLSQQYIGINIKKPLQRFQLMNDICYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSRFLREDSASREILQTHTELV KSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGII ITGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMLRNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNL VKYDRKSGYFQGTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQ LKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALNLCKMVNKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWDRYYDLKPQEIGELIRFPK MGRTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVEPFWVIVEDNDGDYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQ YFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAILR NHQKGPESVMRAVYIAPLEAIARERYRDWERKFGRGLGMRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG PVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTSIVQHAKNGKPAIVFV PTRKHVRLAAVDLMTYSSMDGGEKPPFLLRSIEELEPFIGKIQEEMLRATLHHGIGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSSSMCWGVPLSAHLVV VMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFTYR RLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLERSKCVAIEEDMDLSPLNLGMIASYYYISYTTIERFSSSLTPKTKMKGLLEILSSASEYAQLPIRP GEEEVLRRLINHQRFSFENPRYADPHVKANVLLQAHFSRQSVGGNLALDQREVLLSGSRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ LPHFTKDMAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDSQLLDIVRFCNRFPNIDMSYEVMDGDNVRAGEDITLLVTLERDLEGRTEVGPVDSPRY PKAKEEGWWLVVGDTKSNQLLAIKRVSLQRKSKVKLEFAAPADTGRKSYTLYFMCDSYLGCDQEYNFSVDVGEAAGPDEDSGRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	0	1
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	2.44	0.8804
AT3G45830			unknown protein		Potri.001G233800 [exp]	2.44	0.8994
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	3.16	0.8916
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	6.16	0.8423
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	6.32	0.8420
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	7.61	0.8321
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	10.24	0.8265
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	10.95	0.8653
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	11.22	0.8609
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	11.48	0.8759

Compare expression of checked genes

Potri.015G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.