Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL21.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30930 180 / 1e-55 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) AT1G35680 76 / 3e-16 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083400 [exp] 93 / 1e-22 AT1G35680 173 / 3e-54 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.013G112900 [exp] 82 / 2e-18 AT1G35680 157 / 6e-48 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015441 [exp] 166 / 1e-49 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10011178 [exp] 164 / 3e-49 AT4G30930 218 / 2e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10014819 [exp] 91 / 9e-22 AT1G35680 220 / 1e-72 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10017912 [exp] 89 / 6e-21 AT1G35680 213 / 4e-70 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [poplar] [flax] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Potri.015G095700.3 pacid=42776612 polypeptide=Potri.015G095700.3.p locus=Potri.015G095700 ID=Potri.015G095700.3.v4.1 annot-version=v4.1 ATGGCGCAGAGACGGTGGCTCCAAACCGTAACCCGCCATGCCCTACCTCTCCTCTCCTCAAAACCGACAACCTCTCTCAAACCTCTACCTCACCTTCCAG CCCCCATTTCTCTCAAATCCATTCTCTCTCCCAAACCCCTTCAACAATTTCTATACACTGATCCCACCTTGTTCCACGCTCGCAGTTTCTCTTCAAGTTC TCGCGACGACAGCGAAAACGAAGAAGATGACGTTGAAGAAGGAGGTGAAGAAGAAGAAGATTACGATAGTGATAGCAATGAGGCGGAGGTGGATGATGTT ACGGTGTCGGATATGAAGAGAGAATATTCAGCGGAAGAGATAGAAGCGGAGGCTGCCGCAATTGGGTATAAAGTGATTGGACCGCTCTTGCCATCGGACC GGGTTTTAAAACATCGTGAGCCGGTTTTCGCTGTTGTTCAGATTGGTTCTCATCAATTTAAGGTGAGTAATGGAGATTGTATTTACGTGGAGAGATTGAA GTTTTGTGAAGTAAATGATAAGTTGATTTTGAACAAGGTTCTCATGTTAGGAACAAGTACTCAAACAATCATTGGTAGACCTATATTGCCGGATGCAGCT GTTCATGCAGTTGTTGAGGAGCATGCATTAGATGCCAAGGTAATTATCTTTAAGAAAAAGAGAAGGAAGAATTACCGTCGAACGAAAGGACATCGCCAGG AATTGACTAGGTTGAGAATAGCTGATATCCAAGGAATTGAGAAACCAAAGCCAAAAGTTGATCCAAAGCAAAAAATGGTAGCTGTTAAGCAGCAAGAAAA GGTTGCGGTTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.015G095700.3 pacid=42776612 polypeptide=Potri.015G095700.3.p locus=Potri.015G095700 ID=Potri.015G095700.3.v4.1 annot-version=v4.1 MAQRRWLQTVTRHALPLLSSKPTTSLKPLPHLPAPISLKSILSPKPLQQFLYTDPTLFHARSFSSSSRDDSENEEDDVEEGGEEEEDYDSDSNEAEVDDV TVSDMKREYSAEEIEAEAAAIGYKVIGPLLPSDRVLKHREPVFAVVQIGSHQFKVSNGDCIYVERLKFCEVNDKLILNKVLMLGTSTQTIIGRPILPDAA VHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTRLRIADIQGIEKPKPKVDPKQKMVAVKQQEKVAVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	0	1	Pt-RPL21.5
AT3G49320			Metal-dependent protein hydrol...		Potri.015G007900 [exp]	1.41	0.9251
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.003G080900 [exp]	1.73	0.9228	Pt-CARA.2
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	2.00	0.9231
AT3G01790			Ribosomal protein L13 family p...		Potri.017G066000 [exp]	2.44	0.9003
AT3G21465			unknown protein		Potri.008G205300 [exp]	3.74	0.8978
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	4.47	0.8873
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	4.47	0.9086
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	4.89	0.8541
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	5.19	0.8890
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.001G409800 [exp]	5.91	0.9043

Compare expression of checked genes

Potri.015G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.