Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPD3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 838 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 800 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 790 / 0 Purple acid phosphatases superfamily protein (.1) AT1G13900 202 / 2e-56 Purple acid phosphatases superfamily protein (.1) AT2G03450 201 / 3e-56 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52810 95 / 1e-20 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 94 / 4e-20 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 91 / 3e-19 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 84 / 7e-17 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G07130 84 / 1e-16 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097400 [exp] 884 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 855 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 810 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 805 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 310 / 4e-97 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 304 / 9e-95 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 202 / 2e-56 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.017G055900 [exp] 93 / 9e-20 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 93 / 1e-19 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012144 [exp] 840 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 834 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 832 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037080 [exp] 514 / 4e-177 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 465 / 9e-160 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 307 / 8e-96 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 301 / 2e-93 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 279 / 1e-85 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 271 / 3e-82 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 243 / 7e-69 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G095900.1 pacid=42776284 polypeptide=Potri.015G095900.1.p locus=Potri.015G095900 ID=Potri.015G095900.1.v4.1 annot-version=v4.1 ATGGAGAGTTTCTCATCTCTTCAAATTCTGATTATACTGTTAGTTGGATGCCTGTGTGTGGACTTGGGTCGTCTTGATGTAGCAGCTCACAGCAAGAATG GAATGGGAGTTCAGCCACTGTCGAAGATTGCTATTCACAAGGCTGTTTACTCTCTTCATGACAATGCTTCTATCACAGCATACCCGTATGTTCTTGGTGC CAAGGGGGGAAGTTCCCAGTGGATAACTGTGGAAATTGAATGCCCCAACCCTACTGAGGATGACTGGGTTGCAGTATTTTCTCCGGCAAAATTCAACTCA TCAACATGTTCATCTGATGACGACAAACAAGACGAGCCATATATATGTTCAGCTCCAATAAAGTACAAATTTGCCAACGATTCTGATGCTGGATACACAA AGACCGGCAAAGCATCTTTGAAATTTCAATTGATCAATCAGCGGGCAGATTTCTCATTTGCTTTATTCTCAGGCGGGTTGTCAAATCCAAAGCTGGTGGC AGTTTCTAACTTCATAAAGTTTGCAAATCCAAAGGCGCCTCTTTATCCAAGACTCTCTCAGGGGAAGTCTTGGGATGAAATGACAGTTACCTGGACAAGT GGTTACGGCATTACAGAAGCTGTGCCTATGGTTGAGTGGGGTCTCAAGGGAGAGTCTCAAACTCGATCACCTGCTGGGACGTTGACATTTCATCAAAATA GCATGTGTGGTATACCAGCTCGAACAGTTGGTTGGCGTGATCCCGGTTTTATCCATACGAGTTTCTTAAGAGATTTGTGGCCAAACTCCATGTACTCGTA CAAGCTTGGTCATAAGTTAGTTAATGGTTCATATATATGGAGCAAGTCTTATTCTTTCAAGTCATCACCATATCCAGGGCAAGAATCATTACAGCGTGTT GTGATATTCGGCGACATGGGAAAGGCAGAGCGTGATGGTTCAAATGAATTTAATAATTACCAGCCAGGCTCCCTTAACACCACAGATCAGCTAATCAAGG ACTTAAATGCCATTGACATAGTTTTTCATATAGGAGATATCACATATGCAAATGGATACATCTCACAGTGGGACCAGTTTACCTCACAAGTAGAGCCCAT TGCATCGACTGTTCCATATATGATTGCGAGTGGCAACCATGAGCGAGACTCACCAGGGACAGGATCCTTCTATGATGGAAATGATTCCGGTGGTGAATGT GGTGTTCTAGCAGAGACCATGTTTTACGTTCCCGCTGAGAACAGAGCTAAGTTCTGGTATTCAACAGATTATGGCATGTTCCATTTTTGCATAGCTGACA GTGAACATGACTGGAGGGAAGGATCTGAACAATACAAATTCATCGAGAAATGCCTTGCATCAGCAGACAGGAAAAAACAGCCTTGGTTGATATTCGCTGC TCATCGTGTTCTTGGTTATTCCTCCTCCTACTGGCAGAGTGGTTCATATGGAGAGCCAATGGGAAGGGAGAGCCTGCAGAAGCTTTGGCAAAAGTATAAA GTAGACATTGCATTTTTTGGACATGTCCATAACTATGAAAGAACGTGCCCAATTTACCAGAATCAGTGTGTGAATACAGAAAGATCCCATTATTCAGGCA CTGTCAACGGAACAATCCATGTTGTTGTTGGTGGGGGAGGGAGCCATTTAGGAGAATTTGGTCCAGTGCAGACCACTTGGAGTATTTACAAAGATTCAGA CTTCGGATTTGTCAAACTTACAGCATTTAATTACTCATCTCTTCTCTTTGAATACAAGAAGAGCAGTGATGGAAAGGTCTACGATTCATTCACCATATCA AGGGACTACAGGGATGTGTTGGCCTGTGTGCACGATGGCTGTGAACCAATTACTTTGGCTCGATGA
AA sequence Show only first row Show all	>Potri.015G095900.1 pacid=42776284 polypeptide=Potri.015G095900.1.p locus=Potri.015G095900 ID=Potri.015G095900.1.v4.1 annot-version=v4.1 MESFSSLQILIILLVGCLCVDLGRLDVAAHSKNGMGVQPLSKIAIHKAVYSLHDNASITAYPYVLGAKGGSSQWITVEIECPNPTEDDWVAVFSPAKFNS STCSSDDDKQDEPYICSAPIKYKFANDSDAGYTKTGKASLKFQLINQRADFSFALFSGGLSNPKLVAVSNFIKFANPKAPLYPRLSQGKSWDEMTVTWTS GYGITEAVPMVEWGLKGESQTRSPAGTLTFHQNSMCGIPARTVGWRDPGFIHTSFLRDLWPNSMYSYKLGHKLVNGSYIWSKSYSFKSSPYPGQESLQRV VIFGDMGKAERDGSNEFNNYQPGSLNTTDQLIKDLNAIDIVFHIGDITYANGYISQWDQFTSQVEPIASTVPYMIASGNHERDSPGTGSFYDGNDSGGEC GVLAETMFYVPAENRAKFWYSTDYGMFHFCIADSEHDWREGSEQYKFIEKCLASADRKKQPWLIFAAHRVLGYSSSYWQSGSYGEPMGRESLQKLWQKYK VDIAFFGHVHNYERTCPIYQNQCVNTERSHYSGTVNGTIHVVVGGGGSHLGEFGPVQTTWSIYKDSDFGFVKLTAFNYSSLLFEYKKSSDGKVYDSFTIS RDYRDVLACVHDGCEPITLAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	0	1	Pt-PPD3.1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.002G188100 [exp]	1.73	0.8681
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035700 [exp]	4.24	0.8534
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	10.77	0.8516	Pt-AUX28.3
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	11.48	0.8468
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	16.43	0.8355
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.006G230600 [exp]	18.70	0.8365
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Potri.009G153600 [exp]	21.07	0.8243
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	22.97	0.8309	Pt-CYP94.3
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	22.97	0.8043
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	23.23	0.7925

Compare expression of checked genes

Potri.015G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.