Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37350 701 / 0 Serine/threonine-protein kinase Rio1 (.1.2) AT2G24990 698 / 0 Serine/threonine-protein kinase Rio1 (.1) AT3G51270 59 / 7e-09 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001100 [exp] 61 / 1e-09 AT3G51270 538 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002728 [exp] 756 / 0 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10017927 [exp] 747 / 0 AT2G24990 677 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10032627 [exp] 596 / 0 AT2G24990 531 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10017941 [exp] 59 / 5e-09 AT3G51270 580 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Lus10013682 [exp] 59 / 8e-09 AT3G51270 585 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01163 [poplar] [flax] RIO1 RIO1 family
Representative CDS sequence Show only first row Show all	>Potri.015G096100.1 pacid=42774958 polypeptide=Potri.015G096100.1.p locus=Potri.015G096100 ID=Potri.015G096100.1.v4.1 annot-version=v4.1 ATGTCAGATACACAACGAAGTATCGATCAATTAGAACCTCTAACATCATTAAATGAAGCCAAGCCCGAAGTTGAAGAACAAGTATCCGAGGAGGAAGATT CTTGGTCATCAGACTCTGAAATTGCCGACGCGTTAGACTGGTTAGATACCAGAAACGACGACGATTCAATTGACAGCTCGATCACTCTCAATTCACGCCG TCCTAATGCTCACGGCGGCCTTCACTCGCGTCCTAATTCTTCAACTCTTCAACCTCTCTCTAATCGCAATCAGAAGTTCTCGCATCATATCCGCGCTTCT CCTTTAGAGGAATGGGAAGGGAGAGTGAAAGTTGGAATGTCGAATTCAGTTACGACTGCCATTCGCCATAGTGTGAGAGAGATGGCTATTGGGAAAACTA GAAATACCGAGAAAGCCGATCGCGCTACTGTTGAGCAGGCTATCGATCCTAGAACGCGTATGGTTTTATTTAAAATGTTGAATCGCGGTGTGTTTAATGA TATCAATGGCTGCATTTCAACAGGAAAAGAGGCAAATGTTTATCATGCAACAAAATCTGATGGTCAGGAACTAGCAATCAAAGTGTACAAAACTTCGGTC TTGGTTTTTAAAGATCGAGATCGGTATGTACAAGGTGACTACCGTTTCCGACATGGATATTGCAAGCACAATCCCAGAAAAATGGTAAAGACGTGGGCTG AAAAAGAAATGAGGAATCTTTTGAGGCTAAAAGCAGCAGGAATCAGGTGCCCAACACCCGTACTTTTGAGACTTCATGTTCTGGTCATGGAATTCATAGG AAAAACTGGTTGGGCCGCTCCTCGTCTAAAGGATGCTGCCTTATCTTTGGACAAGTTGCGTGAAGGTTATATGGAGATGATTATTACCATGCGGAGTTTA TATCAGAAGTGTAAGCTAGTGCATGGAGACCTCAGTGAGTACAACATCCTTTACTTGGAGGGTCGCTTGTATATAATTGATGTCTCTCAAGCAGTTGATC TTGACCACCCTCATGCCCTTGACTTTTTGCGTGAAGATTGTCTTCATGTTTCTGATTTCTTTAAGAAACATGGTGTAGCAGTCATGACTATCCGGGAGCT GTTTGACTTCATAGTGGATCCGACTATTAATGATGAATCCATTGACAGTTACTTGGAAGAGGTTCAACAAAAAATTTTGACAAGAGATTTGACTGCAGAG GATGAAATTGCTGACTCTGTATTTGTTCAGTCATATATTCCGAAGACATTAGATGATGTCAAGCATGCCGAGGAGGATGTAAACCGGATAACAAGTGGCA ACGATACTGGAGACATGTACTATAAGACTATTACTGGACTAAAGGAGGCTCTCTCTAACTCTTCTGCAGCTCAACAAGAAAGGCAGCAAGTGGATGCAAA CCCAGTAGAAGAGTCTTCAGTCATTCAGGATGGGCATTCAAACTCTCCTGAGAGTGAATCCGACTCTGGGACAGATTCAGAGGAAGAGGGCTCCGGTGAT TCAGATGGGAGTGGTTCATCATCAGAAACCGAGAAACAGGATCCTGTTGATAAAAAAGCCGCGAGAAAAGAGAATAAGAAGAAGGTCAAGGAGGAGAAGA GGGAAGCTCGAAAGACTAAAACTCCCAAGGCTATGAAGAAAAGAAAAAAGAAAATGGCCAAAGCCAAAAAGACTAGGTAA
AA sequence Show only first row Show all	>Potri.015G096100.1 pacid=42774958 polypeptide=Potri.015G096100.1.p locus=Potri.015G096100 ID=Potri.015G096100.1.v4.1 annot-version=v4.1 MSDTQRSIDQLEPLTSLNEAKPEVEEQVSEEEDSWSSDSEIADALDWLDTRNDDDSIDSSITLNSRRPNAHGGLHSRPNSSTLQPLSNRNQKFSHHIRAS PLEEWEGRVKVGMSNSVTTAIRHSVREMAIGKTRNTEKADRATVEQAIDPRTRMVLFKMLNRGVFNDINGCISTGKEANVYHATKSDGQELAIKVYKTSV LVFKDRDRYVQGDYRFRHGYCKHNPRKMVKTWAEKEMRNLLRLKAAGIRCPTPVLLRLHVLVMEFIGKTGWAAPRLKDAALSLDKLREGYMEMIITMRSL YQKCKLVHGDLSEYNILYLEGRLYIIDVSQAVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPTINDESIDSYLEEVQQKILTRDLTAE DEIADSVFVQSYIPKTLDDVKHAEEDVNRITSGNDTGDMYYKTITGLKEALSNSSAAQQERQQVDANPVEESSVIQDGHSNSPESESDSGTDSEEEGSGD SDGSGSSSETEKQDPVDKKAARKENKKKVKEEKREARKTKTPKAMKKRKKKMAKAKKTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Potri.009G070700 [exp]	4.69	0.7926
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.006G102200 [exp]	9.21	0.7945
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	12.60	0.7765
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	13.85	0.7614
AT2G44860			Ribosomal protein L24e family ...		Potri.004G187800 [exp]	16.73	0.7583
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	22.44	0.6934
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.013G058800 [exp]	27.22	0.7328
AT1G72550			tRNA synthetase beta subunit f...		Potri.018G070200 [exp]	33.22	0.7480
AT3G02220			unknown protein		Potri.004G116800 [exp]	50.10	0.6775
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	58.68	0.7081	Pt-IMP4.1

Compare expression of checked genes

Potri.015G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.