Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 424 / 3e-149 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G74875 48 / 4e-06 unknown protein AT1G17110 44 / 0.0001 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 42 / 0.0005 UBP17 ubiquitin-specific protease 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097600 [exp] 605 / 0 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G056800 [exp] 467 / 3e-165 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 454 / 6e-160 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.013G008800 [exp] 69 / 3e-13 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 65 / 6e-12 AT1G67623 102 / 6e-26 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 462 / 4e-163 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10015784 [exp] 437 / 2e-153 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 285 / 1e-94 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 262 / 6e-86 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10038709 [exp] 63 / 5e-11 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10037978 [exp] 56 / 1e-08 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10022147 [exp] 51 / 7e-08 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10006434 [exp] 46 / 2e-05 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 45 / 5e-05 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10023768 [exp] 40 / 0.0004 AT1G74875 66 / 6e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.015G096200.1 pacid=42776183 polypeptide=Potri.015G096200.1.p locus=Potri.015G096200 ID=Potri.015G096200.1.v4.1 annot-version=v4.1 ATGGTCACGGCTCAAAGGAAAAGATTACGTAAAATCTCTGAGAAACCTGATCTCTTTGATCAGTTACCGGACGATCTTGTTCTTTATATTCTTTTCAAGC TTAGCTCTTCTGCCTCCTGCCCTTCAGATTTTATAAACATTCTTATCACATGTAAAAGATTAAAGCAGCTTGCTCTTGATCCTTTGGTTTTGTCGAAAGT TGGAGTTAAAACGTTCGCCGTGAAAGCAGAACGTTGGTCGGATTCGGCTCACCAGTTTTTAAAACAGTGTGTTAACGCAGGCAACAGAGAAGCCTTGTAC ACTCTAGGAATGATCCGATTTTATTGCTTACAAAACCGAGGAAGTGGAGCGTCTTTAATGGCAAAAGCTGCTATCAAATCTCACGCCTCGGCCCTTTATT CTCTCGCGGTTATTCAATTTAACGGTAGTGGAGGCTCCAAGAATGATAAAAATCTCCGAGCCGGCGTGGCTTTATGTGCTCGAGCCGCTGTTCTGGGTCA TATTGATGCGCTTCGGGAGCTCGGCCATTGCCTTCAAGATGGTTACGGCGTCCCTCAAGATATTGTTCAGGGGCGTCGGTTTTTAGTCCAGGCTAATGCA AAGGAGCTTGCATTATCCTTACGGTCCATGTTAACATGGAAACCCCAACAACAACATGTCGACGAACAACAAAATCTCCACTACGCTTGTTCGGTAATGG GTACTGCTATCACTGGATGTCCATTGCTAAGTGATTTTGGATGTAACGTGCCCGCTCGAGAGGTGCATCCGGTGAACGAGTTTTTGAAAGAGTGGTTCGA GTCGAGACCTGGGATGCTGGATCACGGTTTGAGGCTGTGTTCTCATAGTGGGTGTGGGAGACCCGAGACAAGGCCACGTGAGTTTCGCCGGTGTTCGGTT TGTGGCACTGTAAATTATTGTTCAAGAGGATGTCAAGCACTTGATTGGAAGCTGAGGCATAAAGTGGAATGTGTACCGATGGAGCAATGGCAAGGAGTTT TGGAAGATGGTGGAGATAATGGAATTGGAGGAATGGTGGAGATCGAGGAAGGTGAAGATGTGGCTCTTGTTGAATGA
AA sequence Show only first row Show all	>Potri.015G096200.1 pacid=42776183 polypeptide=Potri.015G096200.1.p locus=Potri.015G096200 ID=Potri.015G096200.1.v4.1 annot-version=v4.1 MVTAQRKRLRKISEKPDLFDQLPDDLVLYILFKLSSSASCPSDFINILITCKRLKQLALDPLVLSKVGVKTFAVKAERWSDSAHQFLKQCVNAGNREALY TLGMIRFYCLQNRGSGASLMAKAAIKSHASALYSLAVIQFNGSGGSKNDKNLRAGVALCARAAVLGHIDALRELGHCLQDGYGVPQDIVQGRRFLVQANA KELALSLRSMLTWKPQQQHVDEQQNLHYACSVMGTAITGCPLLSDFGCNVPAREVHPVNEFLKEWFESRPGMLDHGLRLCSHSGCGRPETRPREFRRCSV CGTVNYCSRGCQALDWKLRHKVECVPMEQWQGVLEDGGDNGIGGMVEIEEGEDVALVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67340			HCP-like superfamily protein w...		Potri.015G096200 [exp]	0	1
					Potri.018G104801 [exp]	2.44	0.8988
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	10.77	0.8248
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	13.78	0.8365
AT5G40660			ATP12 protein-related (.1)		Potri.001G338200 [exp]	15.87	0.8562
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Potri.003G060600 [exp]	19.59	0.7791
AT1G64200		VHA-E3	vacuolar H+-ATPase subunit E i...		Potri.016G139800 [exp]	21.90	0.8107
AT5G24130			unknown protein		Potri.015G021100 [exp]	22.36	0.8566
					Potri.012G019350 [exp]	23.36	0.8517
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.001G135950 [exp]	25.69	0.8442
AT5G18460			Protein of Unknown Function (D...		Potri.019G024100 [exp]	26.98	0.8389

Compare expression of checked genes

Potri.015G096200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.