Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05350 569 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G21470 59 / 4e-09 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G37530 47 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G55130 45 / 6e-05 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT5G06460 45 / 8e-05 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G19180 43 / 0.0004 ECR1 E1 C-terminal related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097700 [exp] 179 / 2e-54 AT1G05350 157 / 1e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G120200 [exp] 55 / 7e-08 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 52 / 9e-07 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G083200 [exp] 51 / 1e-06 AT5G37530 646 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G075800 [exp] 49 / 6e-06 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 49 / 8e-06 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 48 / 1e-05 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.010G031900 [exp] 46 / 4e-05 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 45 / 5e-05 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017479 [exp] 59 / 4e-09 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10012735 [exp] 54 / 1e-07 AT5G37530 661 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10002651 [exp] 54 / 2e-07 AT5G37530 660 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10012507 [exp] 45 / 9e-05 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 44 / 0.0002 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 43 / 0.0005 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Potri.015G096300.2 pacid=42774833 polypeptide=Potri.015G096300.2.p locus=Potri.015G096300 ID=Potri.015G096300.2.v4.1 annot-version=v4.1 ATGGAGGCGGAATTGAAAGAGATGCTTAACGATCTTGATTCTCTCAAGCAATCACAGCCTGATCCTTCAAATCTTGCATCTTCAATTCTTAAGCTGCAAT CGCGTGTTGAGCATCTCACGAAGCTGGCAAAGTCTGCACCTGTTCGGCGTACGAAAGTCCAGGATATGAGCGCGGAGGTGGTAGATAGCAATCCATATAG TAGGCTAATGGCACTTCAGAGGATGGGTATTGTGGACAATTATGAGCGCATTCGGGACTTCTCTGTTGCCATTGTTGGAATTGGTGGTGTTGGCAGTGTT GCGGCTGAGATGTTAACAAGGTGTGGCATAGGTCGTCTTTTGTTGTATGATTATGACAAAGTGGAGTTAGCTAACATGAATAGGCTTTTCTTCCGTCCGG AACAGGTTGGCATGACAAAGACTGATGCTGCCAGTCAGACCCTTTCAGACATCAATCCTGATGTCGTCCTTGAGAGTTTCACATTGAACATCACGACAGT GCAAGGATTTGAAACCTTTATGTCAAGTTTAAGAAATAAATCATTTCGCCCAAATAAAGAAGGCAGTGGAGTAGATCTCGTTTTGAGCTGTGTGGATAAT TATGAGGCAAGGATGGCTGTTAACCAGGCTTGCAATGAGTTGAATCAAACATGGATGGAGTCTGGTGTATCTGAGGATGCAGTCTCAGGTCACATACAAC TGTTGATTCCAGGAGAAACTGCTTGTTTTGCATGTGCACCTCCTCTTGTTGTGGCATCTGGAGTAGACGAGCGTACTCTCAAACGTGAAGGAGTCTGTGC AGCATCTTTACCTACTACCATGGGAGTTGTTGCAGGGCTTTTAGTGCAAAATACGCTGAAGTTACTGCTACAGTTTGGACAAGTGTCTCCTTACCTGGGT TACAATTCTCTTAAAGATTTTTTCCCAACCATGGAAATGAGGCCGAACCCTCAGTGTTCAAATGCTGCTTGTCTGGAGCGTCAGAAAGAATACCTCCTTG TAAAGCCAGCTAGGGACGCTGCAATTATAGCCAAGATGGAGGCAGAAGCCCTATCAGTTCCAGAAGGCCCACTTCATACTGATAATGAATGGAACATCAG GCAACATGTTCACTTGTTCTTTGGTGTTTCTTCAGTGTTGTCGATGATAGTGCGCCAGAAAGGACAGATGCCACAAGTTCAGATGCTCTTCCTGAAGGTC TTACTCGTGAGCTCCCAGCTGCGGACGAGTTTCAAAAATTCCCTGCTGCTGAACCAGCTACAGCCACTTTTGACGACATTGAAGAACTTCGGAAACAACT TGATGCCCTAA
AA sequence Show only first row Show all	>Potri.015G096300.2 pacid=42774833 polypeptide=Potri.015G096300.2.p locus=Potri.015G096300 ID=Potri.015G096300.2.v4.1 annot-version=v4.1 MEAELKEMLNDLDSLKQSQPDPSNLASSILKLQSRVEHLTKLAKSAPVRRTKVQDMSAEVVDSNPYSRLMALQRMGIVDNYERIRDFSVAIVGIGGVGSV AAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAASQTLSDINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPNKEGSGVDLVLSCVDN YEARMAVNQACNELNQTWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKREGVCAASLPTTMGVVAGLLVQNTLKLLLQFGQVSPYLG YNSLKDFFPTMEMRPNPQCSNAACLERQKEYLLVKPARDAAIIAKMEAEALSVPEGPLHTDNEWNIRQHVHLFFGVSSVLSMIVRQKGQMPQVQMLFLKV LLVSSQLRTSFKNSLLLNQLQPLLTTLKNFGNNLMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.015G096300 [exp]	0	1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.004G173700 [exp]	2.00	0.8012
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	4.69	0.8383	PBE1.1
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	6.00	0.8170	Pt-GDI.1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	9.21	0.8007	CMDH.2
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065200 [exp]	11.48	0.8120
AT3G26340			N-terminal nucleophile aminohy...		Potri.008G177000 [exp]	13.41	0.7828	Pt-PBE1.2
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	14.49	0.7148
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	17.02	0.7552	Pt-PBB1.2
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	19.89	0.6840
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	27.87	0.7343	RPT4.2

Compare expression of checked genes

Potri.015G096300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.