Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48550 146 / 3e-45 unknown protein AT2G01940 70 / 2e-14 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G68130 60 / 5e-11 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 57 / 5e-10 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097901 [exp] 246 / 1e-84 AT3G48550 142 / 8e-44 unknown protein Potri.010G101200 [exp] 81 / 3e-18 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.008G140400 [exp] 81 / 4e-18 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.015G033100 [exp] 79 / 2e-17 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 74 / 1e-15 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031883 [exp] 76 / 4e-18 AT2G01940 92 / 1e-23 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10031314 [exp] 77 / 9e-17 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10042288 [exp] 52 / 4e-08 AT2G01940 112 / 4e-29 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10026369 [exp] 49 / 5e-07 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G096500.2 pacid=42775531 polypeptide=Potri.015G096500.2.p locus=Potri.015G096500 ID=Potri.015G096500.2.v4.1 annot-version=v4.1 ATGGAAGAGGGAGACCAAAAGGAGCTTCAGCTTCTCCCTTCACAGCTTTCCATAGCTTCTTCTTCTTCCTCGTCTTCTTTATTGGATTCTTCATTGAGGT ACAAATCATCAGTGGTGTCTGATCACCACCACCATCACAATCAGTTTGGAGGGCCATCACTGGACTTGCAACTATCGATAAGTGTGAGGCCAATCCAGGC ACAATCTAACTGTGTTTTAACAGGTCCCATTTGTGATTTCAGCGATGTGAAGACGGATACGAGCTGCGTTGAGGCCTTGAAATGGCAGGCTGCTGAGCAA GTTAAATTGGCAGCAATTGAAAAGGCTTATGCAGAGAGAGTAAGGGACCTTACAAGGAGGGAGATGGAGTTGGCGCAGTCAGAGTTTGCAAGGGCTAGAC ATATGTGGCAAAGAGCTAGAGAGGAAGTGGAAAAAGCTGAGAGAATGAAAGAGAAAGCTACAAGGCAGATAGATTCTACGTGCATGGAGATCACTTGCCA GTCTTGCAGGCAAAGGTTCAAGCCTTGA
AA sequence Show only first row Show all	>Potri.015G096500.2 pacid=42775531 polypeptide=Potri.015G096500.2.p locus=Potri.015G096500 ID=Potri.015G096500.2.v4.1 annot-version=v4.1 MEEGDQKELQLLPSQLSIASSSSSSSLLDSSLRYKSSVVSDHHHHHNQFGGPSLDLQLSISVRPIQAQSNCVLTGPICDFSDVKTDTSCVEALKWQAAEQ VKLAAIEKAYAERVRDLTRREMELAQSEFARARHMWQRAREEVEKAERMKEKATRQIDSTCMEITCQSCRQRFKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48550			unknown protein		Potri.015G096500 [exp]	0	1
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.009G060300 [exp]	2.44	0.9199
AT2G46640			unknown protein		Potri.002G175300 [exp]	4.69	0.9070
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	6.00	0.9291
AT2G44930			Plant protein of unknown funct...		Potri.017G019300 [exp]	8.48	0.9266
AT3G01750			Ankyrin repeat family protein ...		Potri.001G335400 [exp]	19.39	0.8487
AT5G14090			unknown protein		Potri.003G168700 [exp]	20.39	0.9244
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	21.49	0.9199
AT5G57760			unknown protein		Potri.018G098900 [exp]	22.04	0.8525
AT4G03500			Ankyrin repeat family protein ...		Potri.019G106300 [exp]	25.98	0.8868
AT4G12690			Plant protein of unknown funct...		Potri.015G084500 [exp]	28.77	0.8584

Compare expression of checked genes

Potri.015G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.