Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24900 110 / 3e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098000 [exp] 258 / 5e-83 AT4G24900 318 / 4e-105 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022913 [exp] 115 / 5e-29 AT4G24900 331 / 4e-110 unknown protein Lus10024906 [exp] 86 / 7e-20 AT4G24900 119 / 6e-32 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14968 [poplar] [flax] CCDC84 Coiled coil protein 84
Representative CDS sequence Show only first row Show all	>Potri.015G096700.3 pacid=42775342 polypeptide=Potri.015G096700.3.p locus=Potri.015G096700 ID=Potri.015G096700.3.v4.1 annot-version=v4.1 ATGAAGGGGCAGCGTTGGCAGCGATGGATCAAGAGGGATGCAAGTTGGACCTACAAAAGAATTGAGTATCAGATATCCAATTCAGGATTTTCTGCAGTTG CGAATGTTGGACCATCCATGTATTGTGTGGTCTCTACTTTGCCTTTGAATGCACATTCTGGTACATGTTTATGCAATCCTAATGATTTAACCGCTAACTG GAATAGCCAACATTCTTTCCCTTATAACAGTATAAACTGTGCACCCAATCTCGGTAATGGACAGCTGTGCCAGGTTTATCAGGGTGAAAGATCCGTACAT GGAGTGAGCAGTTTATGGGGTTCACACAATATACCTCAAGTTCCTGCTATGGCTCTACAATTGGCTGGAGTCACTCTAGTACCTGCCTTGACTCCACAAA TGGCTGGAGGAAATGTGCATACAGGAGCTCCTCCTTGGTTTGAAGCAACTCAAGAAAATCAGCTAAACATTCAAGTAACACCGATTTCTTCTAGATCTGT TTTGGTTGCAAATAAGTCTGGGAAAGCACACAAACTGAACCAAAAAAGGGGACTGCTTGGGCAGAAAGGAGAAAGATGGAGATGGCAGGTTGTCAAGAGC GATTGTGATGCTAACTGGCCCCCCAATTTTGGCAGAGTTTGGCAGCATGGCAGCCAAAAGGAATCTAGAAAAGAATATGAGAGTGAGAAACAAAAATTAC CCAATGTGGAGAGTCATACTGAGATGCCAGTTAGGATACAGCCTTATATCAGCAAACACATGGCAATCTCTAAGCTCCAAGTCCTTGTGTATTCTGCAGT TCTTATTATGTCCCATCTTTTCCATTTTCAGGCTTGGCTCATTTTGCAGAGAAACAGCTGTGGGACAATGGGTCACGAGCAAACCACAAATTTTCTACAA CGCTGGTTTCATTTGGCAAAAACTGTGGCGGTATTCGATTCTTGGGGCTCCTACCTTGAACTTGAATCAACTTTAAAATAA
AA sequence Show only first row Show all	>Potri.015G096700.3 pacid=42775342 polypeptide=Potri.015G096700.3.p locus=Potri.015G096700 ID=Potri.015G096700.3.v4.1 annot-version=v4.1 MKGQRWQRWIKRDASWTYKRIEYQISNSGFSAVANVGPSMYCVVSTLPLNAHSGTCLCNPNDLTANWNSQHSFPYNSINCAPNLGNGQLCQVYQGERSVH GVSSLWGSHNIPQVPAMALQLAGVTLVPALTPQMAGGNVHTGAPPWFEATQENQLNIQVTPISSRSVLVANKSGKAHKLNQKRGLLGQKGERWRWQVVKS DCDANWPPNFGRVWQHGSQKESRKEYESEKQKLPNVESHTEMPVRIQPYISKHMAISKLQVLVYSAVLIMSHLFHFQAWLILQRNSCGTMGHEQTTNFLQ RWFHLAKTVAVFDSWGSYLELESTLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24900			unknown protein		Potri.015G096700 [exp]	0	1
AT4G16180			unknown protein		Potri.008G104100 [exp]	3.00	0.8774
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	7.74	0.8382
AT4G22790			MATE efflux family protein (.1...		Potri.001G115400 [exp]	8.66	0.8275
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	12.88	0.7859
AT4G14385			unknown protein		Potri.005G223900 [exp]	12.96	0.8119
AT2G39920			HAD superfamily, subfamily III...		Potri.010G193500 [exp]	17.66	0.8149
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022600 [exp]	18.49	0.7591	GASA1.1
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Potri.004G152800 [exp]	19.89	0.8212
					Potri.001G174000 [exp]	20.19	0.8580
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191000 [exp]	23.13	0.8633

Compare expression of checked genes

Potri.015G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.