Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37100 97 / 8e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 96 / 2e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 94 / 8e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 88 / 7e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 84 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098200 [exp] 686 / 0 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 474 / 1e-168 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 213 / 1e-68 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 96 / 1e-21 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 95 / 3e-21 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 94 / 6e-21 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 93 / 2e-20 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 93 / 2e-20 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016752 [exp] 551 / 0 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 523 / 0 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10037025 [exp] 386 / 2e-134 AT5G51920 86 / 3e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015781 [exp] 384 / 1e-131 AT1G27385 168 / 1e-49 unknown protein Lus10006342 [exp] 101 / 3e-23 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 94 / 9e-21 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 92 / 7e-20 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 90 / 2e-19 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 90 / 2e-19 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 89 / 4e-19 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G097000.1 pacid=42776146 polypeptide=Potri.015G097000.1.p locus=Potri.015G097000 ID=Potri.015G097000.1.v4.1 annot-version=v4.1 ATGGGTAGGAACACTGAAGGAGAGGTTCTTTACAGTGCAGGATCGAAGGCCATGATGGAAGGTCAACCTAAAAAATCTCTTTTTGCATCTATAACAAAAC ATGAAGTCGAAAATAGCAGGTCAAGCAGTATGATTTTGAAGAAAGTACATACTGTAGTTCCTGCACATATCTTGGCAGAAGCAATATCGACAATCCGTGG TCTTGACCTCAGATGGTCAGGTCCAATAACAACAACAGAAATGCAATATGTTGAGCAGTATGTCTTGGCGAAGTACCCCCAATATGCTGGCTTTATCGGA GAGAAGGTAGATCTCTCTACTCTTTGTATCAACGAAGAGATCTCAGAGCCTTCACCCGACGACAAGAACAAGTCACCTAGGACTGGTCTTAGAGAGGTCT CCACACCATCCTTTGGAAGCAATCACCCTGACTTGGATAGAACCCAGTTAGAGCCATCTAGACTGCTTGATATTCTTACAGAGAAATCCTCATTTCCAGG GAGTTTTGTATCGATACCTGAAATCCAAGCTCAGCACAAGGTTCTGAGGCACTGTGGATTACCTGATGATGAGTATCTTGTCCTTTTCACTCAAAACTAC AAAGATGCAATGATGTTAGTAGGAGAGAGCTACCCCTTCTTCCGAGGGAACTTCTACATGACTGCTATCGGGGAAGAAATGGATTACGTAAAGGAATTCG CCAGCTACAAGGAATCAAAAGTGATCCCGACACCAGAGAATTGGTTGAATTTGAGAATCAAGGGATCACAGCTTAGCCAGTATTTTAGAAGGAAGTGTAA GCACTGTCCTAAGGGGTTATTCTCATACCCAGCTGATGTGAATGGAACTCGCTATTCGATGCATTGGGTATCCGAAGCCCATCGGAACTCATGGCATGTT CTACTGGATGCAACCGCCCTGGTCGTCGGGAAGGATAGGTTGAATCTTTCACTTCACAGGCCTGACTTTGTGCTGTGCAGTCCTGACAATACCCCTGCTA ATCCTTCTACAATCACATGCCTTCTTGTTAGGAAGAAATCTTTTGATACTACAATAGCTTCATCTTAG
AA sequence Show only first row Show all	>Potri.015G097000.1 pacid=42776146 polypeptide=Potri.015G097000.1.p locus=Potri.015G097000 ID=Potri.015G097000.1.v4.1 annot-version=v4.1 MGRNTEGEVLYSAGSKAMMEGQPKKSLFASITKHEVENSRSSSMILKKVHTVVPAHILAEAISTIRGLDLRWSGPITTTEMQYVEQYVLAKYPQYAGFIG EKVDLSTLCINEEISEPSPDDKNKSPRTGLREVSTPSFGSNHPDLDRTQLEPSRLLDILTEKSSFPGSFVSIPEIQAQHKVLRHCGLPDDEYLVLFTQNY KDAMMLVGESYPFFRGNFYMTAIGEEMDYVKEFASYKESKVIPTPENWLNLRIKGSQLSQYFRRKCKHCPKGLFSYPADVNGTRYSMHWVSEAHRNSWHV LLDATALVVGKDRLNLSLHRPDFVLCSPDNTPANPSTITCLLVRKKSFDTTIASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Potri.015G097000 [exp]	0	1
AT1G52320			unknown protein		Potri.003G054800 [exp]	3.74	0.6909
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	4.89	0.7235
AT1G69030			BSD domain-containing protein ...		Potri.008G111900 [exp]	6.00	0.6828
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	17.66	0.6776
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G448000 [exp]	19.41	0.6436
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	30.51	0.6290	Pt-ADGT.3
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	36.74	0.6670
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	37.30	0.6677
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G022500 [exp]	42.44	0.6260
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	48.18	0.6351

Compare expression of checked genes

Potri.015G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.