Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CSR1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 1058 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 175 / 3e-47 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 87 / 9e-18 PDC3 pyruvate decarboxylase-3 (.1) AT5G01320 79 / 4e-15 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 71 / 1e-12 PDC2 pyruvate decarboxylase-2 (.1) AT1G68890 49 / 2e-05 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) AT4G33070 44 / 0.0003 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098300 [exp] 1194 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 166 / 8e-44 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 75 / 9e-14 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 74 / 1e-13 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 72 / 7e-13 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 69 / 5e-12 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.010G135500 [exp] 55 / 2e-07 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.006G102500 [exp] 51 / 3e-06 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016751 [exp] 1077 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 981 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 808 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022446 [exp] 723 / 0 AT3G48560 702 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 565 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 322 / 4e-106 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 261 / 4e-83 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 223 / 6e-70 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 151 / 1e-38 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 145 / 1e-36 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [poplar] [flax] FAD_DHS PF00205 [poplar] [flax] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain CL0254 [poplar] [flax] THDP-binding PF02775 [poplar] [flax] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [poplar] [flax] THDP-binding PF02776 [poplar] [flax] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G097200.1 pacid=42775907 polypeptide=Potri.015G097200.1.p locus=Potri.015G097200 ID=Potri.015G097200.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGGCAGCAGCCACCTCTACCTCCACCACACCCATCCGCAAACCCTCCTCCATATACCCATTACCCATTTCCAAATTTACCCTTCCCTTTG CCTTTAACCCCAAGAAACCCTGCTCTCTCCACATCTCCAACTCCCTCTCCAAACCCGCCTCCACCACCACAGCGTCCCCTGCCACAACTGAGAAATTCTC GTTTTCAAGATTTGCTCCCGATCAACCCCGAAAAGGCGCCGACATCCTTGTAGAAGCACTCGAACGTGAAGGTGTGAAAGATGTTTTCGCTTATCCTGGC GGCGCTTCAATGGAGATTCATCAAGCACTCACGCGCTCTAACATCATCCGAAATGTCTTACCGCGCCACGAGCAAGGTGGTGTCTTTGCTGCTGAAGGCT ACGCCCGTGCGTCAGGCTTGCCTGGCGTTTGTATTGCAACGTCAGGTCCTGGCGCCACAAATCTTGTGAGTGGATTGGCAGACGCGCTGCTAGATAGCGT CCCAATAGTGGCCATTACAGGTCAGGTTCCGCGGCGAATGATTGGTACTGATGCGTTTCAAGAAACACCGATTGTTGAGGTAACAAGGTCTATTACGAAG CATAATTATTTGGTTCTTGATGTTGATGATATTCCTAGGATTGTTAGAGAAGCTTTCTTTTTGGCTACTTCTGGGCGGCCTGGACCTGTTTTGATTGATA TTCCCAAGGATATACAGCAGCAGCTGGCTGTTCCTAATTGGGATGTGCCTATGAAATTGCCTGGTTATTTGTCGAGATTGCCTAAGAATCCGAACGAGTT GCATTTAGAGCAGATTGTGAGATTGATTTCGGAGAGTAAGAAACCAGTTTTGTATGTGGGTGGAGGGTGTTTGAATTCAAGTGAAGAGTTGAGGAGGTTT GTTGAGTTGACGGGGATTCCTGTCGCGAGTACTTTGATGGGTCTCGGTGCATTCCCTGTAGGGGATGAGCTGTCTTTGCAAATGCTTGGTATGCATGGGA CGGTTTATGCGAATTATGCTGTGGATAAGAGTGATTTGCTGCTTGCTTTTGGTGTGAGGTTTGATGATCGTGTTACGGGAAAGCTTGAGGCTTTTGCGAG CAGAGCAAAGATTGTGCATATTGATATTGATTCAGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCCGTCTGTGGGGATGTCAAGGTGGCATTACAA GGGATGAACAAGATTTTGGAGAGCAGAGGTGCTAAAGGGAAAATGGACTTTAGGGCATGGAGAGAAGAGTTGAATGAACAGAAAATGAATAATCCGCTGA GTTTTAAGACTTTTGGAGAAGCAATTCCTCCTCAGTATGCTATTCAGGTTCTTGATGAGTTGACTGACGGGAATGCCATTGTGAGTACTGGGGTTGGACA GCATCAAATGTGGGCTGCTCAGTTTTACAAGTATAAAAGACCAAGGCAGTGGTTGACATCAGGGGGTTTGGGGGCGATGGGTTTTGGATTGCCTGCTGCT ATTGGAGCTGCTGTTGCAAATCCTGATGCAATTGTTGTGGATATTGATGGTGATGGAAGCTTCATCATGAATGTCCAGGAGTTAGCAACTATTCGTGTGG AGAATCTCCCTATCAAGATAATGCTTCTGAACAATCAGCATTTGGGCATGGTGGTACAGTGGGAGGATCGATTCTACAAGGCTAACCGGGCTCACACATA TTTGGGGGATCCATCAAACGAGTCTGAGATTTTCCCCAATATGTTGAAGTTTGCAGATGCTTGTGGAATACCTGCTGCCCGTGTGACTAGAAAGGATGAT CTTAGAGCAGCAATTCAAAAAATGTTGGACACTCCCGGGCCATACTTATTGGATGTGATTGTGCCTCACCAAGAACACGTCTTGCCTATGATCCCAAGTG GAGGGGCTTTTAAAGATGTGATAATTGAGGGTGATGGAAGAAGAAAATACTGA
AA sequence Show only first row Show all	>Potri.015G097200.1 pacid=42775907 polypeptide=Potri.015G097200.1.p locus=Potri.015G097200 ID=Potri.015G097200.1.v4.1 annot-version=v4.1 MAAAAAATSTSTTPIRKPSSIYPLPISKFTLPFAFNPKKPCSLHISNSLSKPASTTTASPATTEKFSFSRFAPDQPRKGADILVEALEREGVKDVFAYPG GASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARASGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITK HNYLVLDVDDIPRIVREAFFLATSGRPGPVLIDIPKDIQQQLAVPNWDVPMKLPGYLSRLPKNPNELHLEQIVRLISESKKPVLYVGGGCLNSSEELRRF VELTGIPVASTLMGLGAFPVGDELSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDVKVALQ GMNKILESRGAKGKMDFRAWREELNEQKMNNPLSFKTFGEAIPPQYAIQVLDELTDGNAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAA IGAAVANPDAIVVDIDGDGSFIMNVQELATIRVENLPIKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSNESEIFPNMLKFADACGIPAARVTRKDD LRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVIIEGDGRRKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Potri.015G097200 [exp]	0	1	Pt-CSR1.3
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.001G404600 [exp]	8.71	0.9259
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.001G471900 [exp]	11.22	0.9302	Pt-PSAG.1
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G003800 [exp]	22.91	0.9254
AT2G33855			unknown protein		Potri.004G048400 [exp]	29.22	0.9154
AT4G16410			unknown protein		Potri.006G017500 [exp]	29.32	0.9240
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	34.89	0.9225
AT5G14910			Heavy metal transport/detoxifi...		Potri.001G350500 [exp]	38.66	0.9239
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.007G105900 [exp]	40.80	0.9208
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	41.95	0.9193
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.010G150300 [exp]	43.70	0.9197

Compare expression of checked genes

Potri.015G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.