Plant FIBer expression Database

Potri.015G097700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24930 235 / 2e-78 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028969
[exp]
227 / 5e-75 AT4G24930 221 / 7e-73 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
Lus10007492
[exp]
220 / 2e-72 AT4G24930 224 / 3e-74 thylakoid lumenal 17.9 kDa protein, chloroplast (.1)
PFAM info
Representative CDS sequence
>Potri.015G097700.1 pacid=42776319 polypeptide=Potri.015G097700.1.p locus=Potri.015G097700 ID=Potri.015G097700.1.v4.1 annot-version=v4.1
ATGAAATGCTGGAAAAAGGAAAGGATAACAAACGTAACAAGTATGAGCTTGATTGGTCATGTTCTTCCTCCACATCTTTCAACCTCCAAAATCACTAACT
TTACTTCACAAAATGTTACTCCAAAACCCATTCTCTTCACCAATCTCTTCTCCTTAGCCCTCACTGTTACCTTAAATTCTCCATTGCCTTCCTTGGCTAT
CCCTTCTCTTAACTCTCAGCCTCCCCTTCTCTCTCCTACAACCCCATTTTCTCAGTCCAAGAACTTGCAGATTGGGCTAGAAAATGGGAAAATTAGGCCT
TGCCCGTCAACAAACCCAGGTTGTGTTTCAACGAATCCGCAATCTTCATCATTTTCATTCCCATGGAGGATTCCTGAGAATGATACAGAGAATGCAATTC
AGAAGTTAGAGGAAGCAATCCTGAAAACGCAGAGAAATGCCAAGATTCAAGTCATTGAAGATACCCCAAATGGGAAATATTTACAAGCTGAGGTTGATGG
AGGGTTTGATCCGGATGTCCTTGAGTTTTTGGTAAGAGGAGATGTAGTTGCGTATAGGACTATGGCCACAAAAGTAACCTATGTCTACCCTTTCACAACA
GCATTTGGGGATTCAAAAGGACAAGAAGAAAGAATGAAGAAAATCTTGAACGAATTAGGCTGGTATGCTCCAAGTTTTGATTCCATGGATTAG
AA sequence
>Potri.015G097700.1 pacid=42776319 polypeptide=Potri.015G097700.1.p locus=Potri.015G097700 ID=Potri.015G097700.1.v4.1 annot-version=v4.1
MKCWKKERITNVTSMSLIGHVLPPHLSTSKITNFTSQNVTPKPILFTNLFSLALTVTLNSPLPSLAIPSLNSQPPLLSPTTPFSQSKNLQIGLENGKIRP
CPSTNPGCVSTNPQSSSFSFPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVRGDVVAYRTMATKVTYVYPFTT
AFGDSKGQEERMKKILNELGWYAPSFDSMD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24930 thylakoid lumenal 17.9 kDa pro... Potri.015G097700
[exp]
0 1
AT5G07900 Mitochondrial transcription te... Potri.001G035200
[exp]
4.12 0.9717
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Potri.016G106900
[exp]
5.09 0.9683 FBP.1
AT5G58260 NdhN NADH dehydrogenase-like comple... Potri.013G160600
[exp]
8.00 0.9650
AT2G04039 unknown protein Potri.014G172800
[exp]
8.36 0.9606
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.013G006100
[exp]
8.94 0.9633
AT1G06040 CO BBX24, STO SALT TOLERANCE, B-box domain p... Potri.017G028301
[exp]
9.16 0.9505
AT3G17040 HCF107 high chlorophyll fluorescent 1... Potri.010G145000
[exp]
11.66 0.9494
AT3G55800 SBPASE sedoheptulose-bisphosphatase (... Potri.010G193300
[exp]
12.00 0.9598
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
13.56 0.9604 Pt-AGT.2
AT1G69320 CLE10 CLAVATA3/ESR-RELATED 10 (.1) Potri.008G093500
[exp]
15.65 0.9411

Potri.015G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.