Plant FIBer expression Database

Potri.015G097800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63480 162 / 1e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G099200
[exp]
273 / 2e-94 AT5G63480 163 / 2e-51 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037639
[exp]
125 / 6e-36 AT5G63480 121 / 2e-34 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G097800.1 pacid=42775853 polypeptide=Potri.015G097800.1.p locus=Potri.015G097800 ID=Potri.015G097800.1.v4.1 annot-version=v4.1
ATGGAATATAATTCAAATCCCATTTCACCAGCAACACCACAACACTCAAAAACAACACAAGAACTAGCAATAGAAGGCCAAAAACATCTAGAAGAAACAA
TCCAAGCTGGTTACCAAATCCTTTCTTCTATGAACGATGAGCTTTGCAACCCCACTTTATGGTCCACCACCTCCACTGCTACAACTGCTGTGACTTCACC
CATTACTTCTAAAAATGCCCAAAACGGTGCCGTCGTCATTACTGTCAATGGTGATGCTAATGCTGCTGTATCTGATTCCACTCATGAGTTGAGTGGTGGT
GGTGGTGGTGTGGGTAATGGAGCTCTTGATGAAGCTCGGTTTCGGTATAAGAATTCGGTTGCTGCTCTTCGTGATGTTCTTGCGGCAATTCCTAATTCTC
ACAAGGCAAAACCTTTTGAAACGAGTTCTCCAGCAGATGAAGCTGAGATTAAGAAGTTGGAAGAGCGAGCCTCCAGCCTAAGAAAGGAACTTGCAAAGAA
GAACACATATGTCAAGCTACTCATAGATCAATTACGAGAGATCATTACTGACATATCTACATGGCAGACTCCTTGTTCTGTCTGA
AA sequence
>Potri.015G097800.1 pacid=42775853 polypeptide=Potri.015G097800.1.p locus=Potri.015G097800 ID=Potri.015G097800.1.v4.1 annot-version=v4.1
MEYNSNPISPATPQHSKTTQELAIEGQKHLEETIQAGYQILSSMNDELCNPTLWSTTSTATTAVTSPITSKNAQNGAVVITVNGDANAAVSDSTHELSGG
GGGVGNGALDEARFRYKNSVAALRDVLAAIPNSHKAKPFETSSPADEAEIKKLEERASSLRKELAKKNTYVKLLIDQLREIITDISTWQTPCSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63480 unknown protein Potri.015G097800
[exp]
0 1
AT1G02090 ATCSN7, COP15, ... FUSCA 5, CONSTITUTIVE PHOTOMOR... Potri.014G047200
[exp]
4.12 0.7326
AT3G26618 ERF1-3 eukaryotic release factor 1-3 ... Potri.001G072000
[exp]
36.60 0.6262 ERF1.6
AT1G05430 unknown protein Potri.010G086300
[exp]
43.12 0.6158
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motif... Potri.001G423400
[exp]
58.01 0.5885
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.015G116700
[exp]
58.30 0.5732
AT5G49020 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN A... Potri.010G014600
[exp]
62.99 0.5905
AT2G45730 eukaryotic initiation factor 3... Potri.002G023300
[exp]
63.16 0.5995
AT2G46090 Diacylglycerol kinase family p... Potri.002G162900
[exp]
73.32 0.5966
AT3G57890 Tubulin binding cofactor C dom... Potri.006G059100
[exp]
83.46 0.5566
AT5G53180 ATPTB2 polypyrimidine tract-binding p... Potri.012G029300
[exp]
93.66 0.5809

Potri.015G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.