Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50530 628 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 628 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 593 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT3G52950 501 / 4e-173 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 465 / 2e-159 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G10860 52 / 1e-07 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 49 / 1e-06 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099600 [exp] 770 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.005G070500 [exp] 517 / 2e-179 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 516 / 2e-179 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.013G161500 [exp] 52 / 2e-07 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 50 / 1e-06 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 49 / 1e-06 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 44 / 0.0002 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032625 [exp] 682 / 0 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 670 / 0 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10025698 [exp] 479 / 9e-165 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10035965 [exp] 461 / 2e-157 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10019117 [exp] 52 / 3e-07 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 48 / 1e-05 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 46 / 2e-05 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 44 / 0.0001 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.015G098100.1 pacid=42775225 polypeptide=Potri.015G098100.1.p locus=Potri.015G098100 ID=Potri.015G098100.1.v4.1 annot-version=v4.1 ATGGCAAGTCAAGGAAGTTCGTCGAGGAAAAGTATGTCGTATTCGTCGTTCCAGGGAAGAAAAAAGGCTAATGAGAATGGAGGAGGAGGTCTTGATGGTT CTAGGAGATCTCTCACCTCTTCCCGCTCTATGGGACTAACTGGAGAGCGCACAGTAAAACGTTTGCGTCTGTCAAAGGCCCTGACAGTACCAGAAAGCAC AAGCATTTATCAAGCTTGCTGTCGGATGGCTGCTCATAGAGTTGATGCCTTATTGCTAACTGACTCTAATTCGTTACTTTGTGGAATCCTTACAGATAAG GATTTAGTTTCAAGAGTAATTGCTTGTGAGCTTAATCTTGAGGAAACACCCGTTTCTAAAGTTATGACCAGGAACCCTGTTTTCGTTCTTTCTGAAACTC TTGCCGTGGAAGCTCTCCAGAAGATGGTTCAAGGAAAATTCAGACATTTACCTGTTGTTGAGAATGGAGAGGTTATTGCCTTACTAGATATAGCAAAGTG TTTATATGATGCCATAGCTCGTATGGAAAGGGCAGCAGAAAAAGGAAAAGCCATTGCTGCAGCTGTTGAAGGTGTTGAAAAAAATTGGGGGACATCCATA TCTGGAACCAATACGTTCATTGAGACACTTCGAGAGCGGATCTTTAGGCCTGCTATATCTACGATAATTCCAGAGAATTCAAAGATTGTAACTGTATCAC CGACAGAGACTGTTTTGGAAGTTACAAAGACGATGCTCGAATCTTCATCAAGCTGTGCAGTAGTGACAGTGGATGGAAAACCCCGAGGAATTTTTACTTC AAAGGATATCCTGATGCGAGTAATAACACAAAATCTTTCTCCAAATTCAACTCTTGTGGAGAAGGTCATGACTCCCAATCCAGAATGTGCAACGATTGAT ACACCAATTGTTGATGCTCTGCACACCATGCATGATGGGAAATTTTTGCACCTTCCTGTGCTAGACAGAGATGGGAACATAGTTGCTGTCATTGATGTAA TTCATATCACTCACGCTGCAGTGGCCACAGTAAGCCAAGTCGGGAGCGCTGCTGCAGCAAATAATGAGACTGCAAACACAATGATGCAGAAGTTTTGGGA CTCTGCCATGGCTTTGAGTCCTAATGGTGACGATGAGGAGGCGCGGAGTGAAGGTTCCTTGAAATTGGCTTCCGAAGGAACAGAGGCTGGGAGATCGCTT CTCTATCCATCATCAGTGTATCCAAATGTATTTTCTTTTAAAATTGAAGACAAAAGGGGGCGAATGCACAGATTTACTTGTGAGACCCGGAATCTGACTG ATATAATAACTTCAATCCTTCAGAGGCTAGGGGATGACATTAACTGTAACAACTTACCTCAAATTCTGTATGAAGATGAAGACCATGACAAAGTTGTTCT GGCATCAGATAGTGATCTCATCACAGCTGTAGAGCATGCCAGATCAGCTGGTTTGAAGAGTCTGAGGTTGCACTTAGATTGCTCAGGAAAAGGTGGAAGG AAGGGTTCTCGTTCAGAAGGTTTCGATTATGGTGAAGCAGATGCACGGGCATCTGCATACAGTACTCTTGCCGCAGGCGCTGCTCTAGTTGCTGGGGTAG GCGTATTAGCATACCTGAAGAGGTCTGGTTACTGA
AA sequence Show only first row Show all	>Potri.015G098100.1 pacid=42775225 polypeptide=Potri.015G098100.1.p locus=Potri.015G098100 ID=Potri.015G098100.1.v4.1 annot-version=v4.1 MASQGSSSRKSMSYSSFQGRKKANENGGGGLDGSRRSLTSSRSMGLTGERTVKRLRLSKALTVPESTSIYQACCRMAAHRVDALLLTDSNSLLCGILTDK DLVSRVIACELNLEETPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSI SGTNTFIETLRERIFRPAISTIIPENSKIVTVSPTETVLEVTKTMLESSSSCAVVTVDGKPRGIFTSKDILMRVITQNLSPNSTLVEKVMTPNPECATID TPIVDALHTMHDGKFLHLPVLDRDGNIVAVIDVIHITHAAVATVSQVGSAAAANNETANTMMQKFWDSAMALSPNGDDEEARSEGSLKLASEGTEAGRSL LYPSSVYPNVFSFKIEDKRGRMHRFTCETRNLTDIITSILQRLGDDINCNNLPQILYEDEDHDKVVLASDSDLITAVEHARSAGLKSLRLHLDCSGKGGR KGSRSEGFDYGEADARASAYSTLAAGAALVAGVGVLAYLKRSGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.015G098100 [exp]	0	1
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.017G087900 [exp]	3.00	0.7808
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	4.35	0.8307
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	4.47	0.7787
					Potri.019G120050 [exp]	6.32	0.8066
AT2G32970			unknown protein		Potri.002G224900 [exp]	8.94	0.7741
AT5G11040		AtTRS120	TRS120 (.1)		Potri.006G259500 [exp]	9.16	0.7997
AT5G28910			unknown protein		Potri.019G019800 [exp]	10.19	0.7766
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.010G169100 [exp]	14.83	0.7181
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	15.49	0.7307
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	20.00	0.7815

Compare expression of checked genes

Potri.015G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.