Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CUS3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22950 137 / 1e-40 MADS AGL19 AGAMOUS-like 19 (.1) AT2G45660 134 / 2e-39 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT3G57230 131 / 5e-38 MADS AGL16 AGAMOUS-like 16 (.1.2) AT1G26310 129 / 6e-37 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G58780 128 / 1e-36 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G62165 125 / 4e-36 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G42830 125 / 2e-35 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 124 / 3e-35 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT5G15800 124 / 5e-35 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G69120 123 / 1e-34 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G100200 [exp] 251 / 2e-85 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074200 [exp] 132 / 2e-38 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.002G151700 [exp] 131 / 4e-38 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.001G112400 [exp] 130 / 9e-38 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.014G074100 [exp] 129 / 3e-37 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.013G104900 [exp] 128 / 6e-37 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 125 / 9e-36 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.012G132600 [exp] 125 / 1e-35 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.002G109601 [exp] 124 / 3e-35 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017871 [exp] 129 / 6e-38 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 127 / 3e-36 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034662 [exp] 127 / 3e-36 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10005302 [exp] 126 / 9e-36 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 124 / 1e-34 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10014143 [exp] 121 / 9e-34 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10007983 [exp] 121 / 1e-33 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 121 / 1e-33 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10003124 [exp] 120 / 2e-33 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10039580 [exp] 120 / 3e-33 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.015G098400.1 pacid=42775452 polypeptide=Potri.015G098400.1.p locus=Potri.015G098400 ID=Potri.015G098400.1.v4.1 annot-version=v4.1 ATGGGGAGAGGGAAAGTGGAGCTAAAAAGAATAGAGAATTCAGCTAGCAGGCAAGTAACCTTCTCAAAGAGAAGAAATGGGCTTCTAAAGAAAGCTTTCG AGCTTTCAATTCTCTGCGAAGCTGAAGTTTCCCTCATTATTTTCTCTCCAAGCGGAAAGTTTTACCAGTTTTCAAGTCATGACATGGAGAGGAGCGTTGC TCGGTACCGGAGTGAAGTCGGTCTGCCTGGAACAAATGACCAACGCTCTAGATCCTTGGAGTTTTGGAGATGTGAGATTGAAGAGTTAAGGAGAACAATA ACTAAAACAGAAGCACAGCTTAGGCACTTTATTGGAGAAGATATAGCACCGCTGGGGTTGAAAGAGTTGAAGCAACTGGAGCGACAGTTAAAGACAGGGG TTGAGCGTATCCGCTCTAAGAAGAAACGAGTCATCTCAGAGCACATCAAATTGTTGAAGAGCGAGCAAAGAGCCCTTCAAGAGGAGAATGCTCGTCTTCA GAAAAGATTGCATGAGCTGCCCGATGCCAATGTAAGCTCGAGGATTCCGGAACCAAATGCATGTAATGCTTTTCATCAGCAAAGGATTTTTCTTGAGGGA TCTCACCAATAA
AA sequence Show only first row Show all	>Potri.015G098400.1 pacid=42775452 polypeptide=Potri.015G098400.1.p locus=Potri.015G098400 ID=Potri.015G098400.1.v4.1 annot-version=v4.1 MGRGKVELKRIENSASRQVTFSKRRNGLLKKAFELSILCEAEVSLIIFSPSGKFYQFSSHDMERSVARYRSEVGLPGTNDQRSRSLEFWRCEIEELRRTI TKTEAQLRHFIGEDIAPLGLKELKQLERQLKTGVERIRSKKKRVISEHIKLLKSEQRALQEENARLQKRLHELPDANVSSRIPEPNACNAFHQQRIFLEG SHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Potri.015G098400 [exp]	0	1	CUS3.2
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	1.73	0.8199
AT5G43150			unknown protein		Potri.003G187500 [exp]	9.38	0.7629
AT5G56140			RNA-binding KH domain-containi...		Potri.011G168000 [exp]	11.22	0.7266
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132700 [exp]	13.96	0.7660
AT4G38690			PLC-like phosphodiesterases su...		Potri.004G172000 [exp]	18.49	0.6762
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	22.80	0.7629
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Potri.010G191700 [exp]	23.66	0.7418
AT3G59390			unknown protein		Potri.019G051300 [exp]	26.32	0.7318
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	28.14	0.7311
AT1G26665			Mediator complex, subunit Med1...		Potri.001G083801 [exp]	28.14	0.6335

Compare expression of checked genes

Potri.015G098400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.