Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48680 374 / 1e-132 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1) AT5G63510 371 / 2e-131 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2) AT1G47260 137 / 3e-39 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1) AT1G19580 137 / 3e-39 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2) AT5G66510 137 / 3e-39 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G100400 [exp] 412 / 8e-148 AT3G48680 389 / 3e-138 gamma carbonic anhydrase-like 2 (.1) Potri.002G034100 [exp] 142 / 4e-41 AT1G19580 497 / 2e-180 gamma carbonic anhydrase 1 (.1.2) Potri.005G229000 [exp] 141 / 7e-41 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2) Potri.005G120800 [exp] 135 / 3e-38 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031845 [exp] 384 / 2e-136 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031278 [exp] 379 / 1e-134 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031847 [exp] 161 / 4e-50 AT3G48680 179 / 7e-58 gamma carbonic anhydrase-like 2 (.1) Lus10024267 [exp] 139 / 6e-40 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10001959 [exp] 139 / 6e-40 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10028321 [exp] 138 / 1e-39 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2) Lus10041768 [exp] 137 / 3e-39 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G098600.1 pacid=42776490 polypeptide=Potri.015G098600.1.p locus=Potri.015G098600 ID=Potri.015G098600.1.v4.1 annot-version=v4.1 ATGGCAACCACCCTAGCAAGAATCGCTCGACAATCCCTAACCACCACCACCAATCTCTCACTTAACCGTCACTTCGTAACGGAGGCGGCTGCGGCTTCGA CAGCGTCTTCAAAATCGATAACGCCATCAGTAGATCGAGTGAAATGGGACTCCCGAGGACAGAGGCAAATAATTCCGTTAGGTCAATGGCTACCGAAGGT AGCTGTGGATGCATACGTGGCACCAAATGTGGTACTCGCGGGTCAAGTTACTGTGTATGATGGAGCATCAGTTTGGAATGGAGCTGTCCTACGTGGCGAT CTTAATAAGATCACCGTCGGTTTTAGCTCTAATGTTCAAGAACGGTGTGTCGTTCACGCTGCCTGGAACTCTCCTACAGGACTGCCAGCAGAGACATCTA TTGAAAGGTATGTTACCATTGGTGCATACAGTCTCCTGCGGTCCTGCACAATTGAGCCGGAGTGCATTATTGGGCAGCATTCTATCCTTATGGAAGGATC ATTGGTGGAGACACACTCCATCCTGGAAGCTGGGTCTGTGCTTCCCCCAGGAAGGAGAATTCCAACAGGTGAACTTTGGGCAGGAAATCCAGCAAGGTTT GTCAGAACACTGACCCATGAAGAGATACTAGAAATCCCTAAACTAGCTGTTGCAATTAATGATCACAGCAAAACCCATTTCTCAGAGTTTCTCCCGTACT CCACAGTATATTTAGAGGTTGAGAAGTTGAAGAAGAAGCTGGGGATTAGTGTTTGA
AA sequence Show only first row Show all	>Potri.015G098600.1 pacid=42776490 polypeptide=Potri.015G098600.1.p locus=Potri.015G098600 ID=Potri.015G098600.1.v4.1 annot-version=v4.1 MATTLARIARQSLTTTTNLSLNRHFVTEAAAASTASSKSITPSVDRVKWDSRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVYDGASVWNGAVLRGD LNKITVGFSSNVQERCVVHAAWNSPTGLPAETSIERYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARF VRTLTHEEILEIPKLAVAINDHSKTHFSEFLPYSTVYLEVEKLKKKLGISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.015G098600 [exp]	0	1
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004500 [exp]	1.00	0.8837
AT5G16660			unknown protein		Potri.019G041700 [exp]	4.89	0.8539
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	7.14	0.8347
AT5G14105			unknown protein		Potri.001G328100 [exp]	10.00	0.8304
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	12.64	0.8238
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053300 [exp]	12.96	0.8128
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G229000 [exp]	13.74	0.8755	APFI.2
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.010G203500 [exp]	13.78	0.8498	Pt-CTIMC.2
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	15.55	0.8795
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	16.61	0.7946	CCRL4

Compare expression of checked genes

Potri.015G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.