Plant FIBer expression Database

Potri.015G098700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 426 / 6e-145 unknown protein
AT2G15640 46 / 6e-05 F-box family protein (.1)
AT1G30920 44 / 0.0002 F-box family protein (.1)
AT2G16450 43 / 0.0004 F-box and associated interaction domains-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G100500
[exp]
921 / 0 AT5G63520 425 / 3e-144 unknown protein
Potri.004G005700
[exp]
755 / 0 AT5G63520 419 / 8e-142 unknown protein
Potri.011G010200
[exp]
715 / 0 AT5G63520 427 / 3e-145 unknown protein
Potri.011G010100
[exp]
699 / 0 AT5G63520 394 / 2e-132 unknown protein
Potri.012G100600
[exp]
434 / 6e-148 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098800
[exp]
429 / 6e-146 AT5G63520 282 / 1e-88 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10442 FIST_C FIST C domain
Representative CDS sequence
>Potri.015G098700.1 pacid=42775446 polypeptide=Potri.015G098700.1.p locus=Potri.015G098700 ID=Potri.015G098700.1.v4.1 annot-version=v4.1
ATGACAAGCTTTGCATCAATAAACGAAGACCTTATCCTAAACATACTAAAGAGACTACCAGCTTTATCCTTTGCATCAGCAGCTTGTGTTAGTAAATCAT
GGAACCAAATTTGCAATCAAATCCTCTACAAACCAAAGTTTGCCTCTGCTTTTTCTCTCAATCCAGACGAAAAGGTTGCATTAGAAGAGGTGGTGAATAA
GGTTCTCTCAGAGCCAATTAGACCACATTTTGCCATTGCAAATGTTATTGGCAGTGGAGTTGATTTGAGTGAAAGACTCAATTTTTTAGCAACAAAACTT
GGTTTCCAAACTCCAATTATTGTGTCTTGTACAAGTGGAATCATGGGAAGAGATGCTGTTACTGATGAACATAGAGAGGTTATGTTGGAAGAATATTGGG
TTGATGGAGAATCAAATCCATGCAATGGTATTATTTTGACTGTGGGGTTTTTACCAGGACTAAAAGTTGATGCCATCCCGCTGTTTCAACCAAGAAAGGG
ATGTCGAGCGACAATGGTTGATAACTTTGTGATGGATATTAAGGATTATGCAACTTCTATTTCTGGTTGTGCATCACCAGTTGGCATTATAATGTTTGGA
GATGAAGATGCTGACCAGAAACCTGTCATGGAAAAGCTGGATCATGCCATGTCAAGTGACACTATCATTATCGGTGACGAGAGAGCCCAATTCTTGTACA
GAAATGGCGTAGAGTCAAGAAATGACTATGAGAGCAGTGAATATTTTTCTGCTGCAGTTGCTCTTGTATTTGCAAGGGATCGAGACAAACCTTGCGGCAC
AGGGGAAATCCAATTCCATGCTGCATTATCATCTGGTGTTTCTGCAGTAGGTCCAAGGTACAAGGCAGTTTCTGTCAAAAAGATTGTATCTGGGACAGGT
CATACTACATGGCTTACTGCCAGAAGAGAAGGGGAACATGAGATTCAAGATGGTCAAAGGATTCTAGATGACATCAACAATGAGTTGGTGAACCAAGTTG
GACACCCTGATCTGTACATTGGGGTTACTGAACAAAGACGTTGCTTTATAGGGTCACAGAAGTCAAGAGTGATGACATTCCTGGTTTTCCATGGAGTTAT
GGGGGGAGATCAAGAGTATCTTTTTGCTGACGGAGTTGGCATCAGAACCGGTGACTATTTCCAATTTTACCATCCAGATCCAAGTGCTGCATTATCTTCA
TGCAGTAATGTCTCCAAGAATTTCAGAAACCTGAATCTAGACTGGAGTTCTAGAAACTGCCTTCACGCACGGGGTGTTTATGACAATGTTTGTAATAAGG
AGCTTGTTGGAGGTTTTGTTTTCTCTTGTTGTGGCCGTGGTGAATCATTTTTCGAACGCTGCAATGTTGATAGCTCACCATTTTTGGACAATTTTCCCGG
GTTCCCAATGGCTGGAATATTTTGTCGAGGGGAGATTGGACGTGGCTTTTCAGTTTTTAATGCGGATGAAGGCCAGGAAGAAAGGACTTCGCATTGCTGC
CTACATGTATATAGCGCTGTATATCTGTTGGTGTCTTATACTCCTGCACATCCCTAG
AA sequence
>Potri.015G098700.1 pacid=42775446 polypeptide=Potri.015G098700.1.p locus=Potri.015G098700 ID=Potri.015G098700.1.v4.1 annot-version=v4.1
MTSFASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKFASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFLATKL
GFQTPIIVSCTSGIMGRDAVTDEHREVMLEEYWVDGESNPCNGIILTVGFLPGLKVDAIPLFQPRKGCRATMVDNFVMDIKDYATSISGCASPVGIIMFG
DEDADQKPVMEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYESSEYFSAAVALVFARDRDKPCGTGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTG
HTTWLTARREGEHEIQDGQRILDDINNELVNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHPDPSAALSS
CSNVSKNFRNLNLDWSSRNCLHARGVYDNVCNKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFNADEGQEERTSHCC
LHVYSAVYLLVSYTPAHP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.015G098700
[exp]
0 1
AT4G25280 P-loop containing nucleoside t... Potri.015G129000
[exp]
2.44 0.8144
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.013G008300
[exp]
2.64 0.8752
AT5G40240 nodulin MtN21 /EamA-like trans... Potri.015G073200
[exp]
4.00 0.8043
AT4G21215 unknown protein Potri.004G023000
[exp]
4.79 0.7737
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.002G072900
[exp]
4.89 0.8296 SEU.1
AT4G22120 ERD (early-responsive to dehyd... Potri.011G009900
[exp]
5.29 0.7654
AT3G57710 Protein kinase superfamily pro... Potri.005G068000
[exp]
6.00 0.8119
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.009G021800
[exp]
7.54 0.7790
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.002G010532
[exp]
7.93 0.8070
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.012G060100
[exp]
8.12 0.7752

Potri.015G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.