Plant FIBer expression Database

Potri.015G098800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 282 / 1e-88 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G100600
[exp]
840 / 0 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098700
[exp]
395 / 1e-132 AT5G63520 426 / 6e-145 unknown protein
Potri.012G100500
[exp]
383 / 1e-127 AT5G63520 425 / 3e-144 unknown protein
Potri.004G005700
[exp]
372 / 3e-123 AT5G63520 419 / 8e-142 unknown protein
Potri.011G010200
[exp]
367 / 2e-121 AT5G63520 427 / 3e-145 unknown protein
Potri.011G010100
[exp]
352 / 1e-115 AT5G63520 394 / 2e-132 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.015G098800.1 pacid=42776080 polypeptide=Potri.015G098800.1.p locus=Potri.015G098800 ID=Potri.015G098800.1.v4.1 annot-version=v4.1
ATGCGCTTTGCATATAGAAGTACTACTCAAATGGCTAAGCAGCTATCAGGAAGAATGAGGTGTGGGTTCTCCCTTGTGACTGAAGAGATAATGCAAAACA
TACTCTCAAGGTTACCGGCTTTGGCCTTTGCATATGCTGCCTGTGTTAACAAACGCTGGTACAAAATATGCAGTCAAATACTCAAAAGGCCTAAGCTTGC
TTCTGCTCTCTCCCTCAACCCTTCTCTCCATGATGCTGTGGAAGAGGTTATTGAACAGGTTCTCTCTGAGCCTATTCGTCCACACTTTGCTATTGCTTGC
ATCAGCAAGGAGTTTAACTTGGAACTGACTCATGGACTGATAATTAAAAAACTAGGTTCAAGCATCCCAATCATTACTAATATTGCCAGTGGAATCATTG
GTGTTGATGGCATTGCTGATGAACTGTATGAGGAAAAATGGGAAACAACAACTGCTGGTCCTAATTCGCAAGATTCGGATAGAGTTGACCGAGGATTAGT
TTTGCTTGTTGGATTTTTACCTGGGCTCAAAATTGGCACCATTCCACTGTTACGACCGATGCAGGAATCCAATACCTTGGTTGACAAATTTGTGATGGAT
ATTTTACATTACACATCTGCTGTATCAGATTGTCCAGCCCCTACTGGGATCATAATATTTGGAGATAAAACCACTGACATGAAACCTATTGTTTCAAAGA
TGGATTGTGCCATGCCAGAAGAAACAGTCATTGTAGGCGATGCAAGTGCCAACTTTATTTTCAGAAATGGGGATAATTCTCTAAACCATCTTGCTCATAC
TTGCTACTTTCAAGCTGTTGCTCTTGTATTTGCAAGGGACAGATACAAGCCTGAAGGTATAGGAGAAATTCAATTCCACGTGACAATGTCAAAAGGTGTA
ATGCCATTTGGTCCCACACTAGAGGCAGCTTCTGTTCTACAGAAAGATTCAGAGTGTTCATGGATCAGTGCAAAACTGAAAGGACAGAATGGCATTGTGG
CTGCCGGGGAGATTTTAAATGATCTCAAACAACAGTTCAGGGACGCAAATAAGTCTGCTGATATCTACATTGGTGTCACAAAAGAAACTATAAGCACCAA
TGATTCCGGAATTTGGACACCAGGAAGATGTTTGGATTTCTACGAAGTAAGAGGAGGAGGTGGCCGTTACTTTAATGTCAATGGTGTTGGCATCCAGCCT
GGTGATTCCTTCCTATTCTACCAGTCAGATTCTGAAACTGCTTCATCAACATGTGATCACGCCTTTAACAAACTTTTAGCCCTGAAGGCAGAACTGAAAA
GCAAAAATTATCTTCATTTGAGCAAGTTCGCTGACAAGGATGACAAGAAAGAAGTTCTCGGTGGTCTCATTTTCTCTTGCTATCGTCGTGGCGAGTCATT
CTTCGGGGACCCTTTTGTTGATAGCTATCCATTTTGCGACAGCTTTCCTACGGCTCCAGTAGCAGGATTATTCTGCAGAGGAGAAATTGGAAGGGGCCCC
GAAAGCTTGATGAATGAAGAATACGAAGATGTAAACTCCCCTAGGTGCTGTCTCCATGTTTACAGCACAATATATTTGGTTATGTCATATCTTCCACCAT
CCGTAGAGAATTAA
AA sequence
>Potri.015G098800.1 pacid=42776080 polypeptide=Potri.015G098800.1.p locus=Potri.015G098800 ID=Potri.015G098800.1.v4.1 annot-version=v4.1
MRFAYRSTTQMAKQLSGRMRCGFSLVTEEIMQNILSRLPALAFAYAACVNKRWYKICSQILKRPKLASALSLNPSLHDAVEEVIEQVLSEPIRPHFAIAC
ISKEFNLELTHGLIIKKLGSSIPIITNIASGIIGVDGIADELYEEKWETTTAGPNSQDSDRVDRGLVLLVGFLPGLKIGTIPLLRPMQESNTLVDKFVMD
ILHYTSAVSDCPAPTGIIIFGDKTTDMKPIVSKMDCAMPEETVIVGDASANFIFRNGDNSLNHLAHTCYFQAVALVFARDRYKPEGIGEIQFHVTMSKGV
MPFGPTLEAASVLQKDSECSWISAKLKGQNGIVAAGEILNDLKQQFRDANKSADIYIGVTKETISTNDSGIWTPGRCLDFYEVRGGGGRYFNVNGVGIQP
GDSFLFYQSDSETASSTCDHAFNKLLALKAELKSKNYLHLSKFADKDDKKEVLGGLIFSCYRRGESFFGDPFVDSYPFCDSFPTAPVAGLFCRGEIGRGP
ESLMNEEYEDVNSPRCCLHVYSTIYLVMSYLPPSVEN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.015G098800
[exp]
0 1
Potri.009G163001
[exp]
2.00 0.8175
AT1G22275 ZYP1b Myosin heavy chain-related pro... Potri.002G096400
[exp]
5.47 0.7939
AT5G10830 S-adenosyl-L-methionine-depend... Potri.005G067500
[exp]
12.96 0.7924
AT1G34270 Exostosin family protein (.1) Potri.013G116200
[exp]
13.49 0.7535
AT1G43860 sequence-specific DNA binding ... Potri.002G073200
[exp]
15.19 0.7504
AT2G23140 RING/U-box superfamily protein... Potri.005G144700
[exp]
15.49 0.7423
AT5G08560 transducin family protein / WD... Potri.008G002700
[exp]
19.07 0.7715
AT3G11900 ANT1 aromatic and neutral transport... Potri.016G064500
[exp]
21.21 0.7108 Pt-ANT1.2
AT2G40340 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding sup... Potri.008G073600
[exp]
22.97 0.7937 DREB8,Pt-DREB2.4
AT3G08960 ARM repeat superfamily protein... Potri.016G119900
[exp]
23.02 0.7340

Potri.015G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.