Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13080 154 / 2e-48 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 141 / 3e-43 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G41570 129 / 4e-38 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G64000 129 / 6e-38 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G46130 125 / 1e-37 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G49520 117 / 1e-31 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 113 / 8e-31 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT1G69310 112 / 2e-30 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT4G18170 111 / 6e-30 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G44745 109 / 6e-30 WRKY WRKY12 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066860 [exp] 164 / 5e-52 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 162 / 2e-51 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 160 / 1e-50 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 159 / 8e-50 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.014G090700 [exp] 142 / 2e-43 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G164900 [exp] 139 / 1e-41 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.008G103300 [exp] 121 / 2e-33 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G147700 [exp] 120 / 8e-33 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 117 / 2e-32 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012547 [exp] 160 / 2e-51 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 161 / 2e-50 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 152 / 2e-47 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 151 / 3e-47 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 137 / 1e-40 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 136 / 2e-40 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10037785 [exp] 118 / 5e-32 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 117 / 6e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004612 [exp] 114 / 8e-31 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10004537 [exp] 110 / 9e-30 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G099200.1 pacid=42775730 polypeptide=Potri.015G099200.1.p locus=Potri.015G099200 ID=Potri.015G099200.1.v4.1 annot-version=v4.1 ATGCCAATGGAGAAGTATCAAATATTCCTTCCTGTTTCTGGCCCATCAAGTCCTTCAGTTTCACCATCATCACTAAACATGGCAAATCCTCTAATCTATT TTCACGGTGACAGTGAAAATGGGGTCAAGCCAGAAAGTAGGTTTCAACATTTGGATGCTAAAAGCAGTGTTTCTCAGACTAGTAGAATCTGTAACGGTTC TGAGTTTAAGGTGAAACCAGGAAAGAGAGGAGGGGATAGTGATGATTTTAGGAAGCATAGATATGCATTTCAAACTCGAAGCCAAGTTGATATACTTGAT GATGGGTATAGATGGAGGAAATATGGGCAAAAGACTGTCAAGAGCAGCAAGTTTCCAAGAAGCTACTACAGGTGTACAAGTACTGGGTGCAATGTCAAGA AGCAAGTCCAACGCAATTCTAAAGATGAAGGGATTGTTGTGACCACCTATGAAGGGATGCATAACCATCCAACTGAGAGGTCCTCTGAAAACTTTGAGGA CATCCTGAGGCAGATCCAAACTTATACTCCTTTCTAA
AA sequence Show only first row Show all	>Potri.015G099200.1 pacid=42775730 polypeptide=Potri.015G099200.1.p locus=Potri.015G099200 ID=Potri.015G099200.1.v4.1 annot-version=v4.1 MPMEKYQIFLPVSGPSSPSVSPSSLNMANPLIYFHGDSENGVKPESRFQHLDAKSSVSQTSRICNGSEFKVKPGKRGGDSDDFRKHRYAFQTRSQVDILD DGYRWRKYGQKTVKSSKFPRSYYRCTSTGCNVKKQVQRNSKDEGIVVTTYEGMHNHPTERSSENFEDILRQIQTYTPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G099200 [exp]	0	1
AT5G65300			unknown protein		Potri.005G072000 [exp]	3.60	0.9345
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G048200 [exp]	7.07	0.9261	ZOG1.17
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	12.48	0.9255	Pt-ATNAC3.1
AT5G47390	MYB		myb-like transcription factor ...		Potri.003G079500 [exp]	15.74	0.8811
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	18.16	0.9260	Pt-ATNAC3.2,NAC036
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G100801 [exp]	18.52	0.9182
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.013G074000 [exp]	28.63	0.9064
AT4G14450		ATBET12	unknown protein		Potri.008G164801 [exp]	29.41	0.8676
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.003G067700 [exp]	34.87	0.8895	ALDH7.2
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	38.72	0.9211

Compare expression of checked genes

Potri.015G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.