Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08900 115 / 3e-29 RGP3 reversibly glycosylated polypeptide 3 (.1) AT3G02230 115 / 3e-29 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT5G15650 114 / 7e-29 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT5G13090 100 / 2e-24 unknown protein AT5G50750 101 / 3e-24 RGP4 reversibly glycosylated polypeptide 4 (.1) AT1G12020 91 / 2e-21 unknown protein AT1G24270 90 / 2e-21 unknown protein AT1G62422 81 / 3e-18 unknown protein AT5G16510 55 / 2e-08 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G101200 [exp] 278 / 1e-93 AT5G13090 93 / 2e-22 unknown protein Potri.012G101100 [exp] 117 / 5e-30 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.008G097600 [exp] 113 / 1e-28 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.017G099100 [exp] 113 / 1e-28 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.004G117800 [exp] 113 / 2e-28 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.015G060300 [exp] 112 / 4e-28 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.010G156700 [exp] 111 / 6e-28 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.003G168500 [exp] 96 / 1e-22 AT5G13090 100 / 1e-24 unknown protein Potri.001G059400 [exp] 95 / 2e-22 AT5G13090 119 / 8e-32 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022443 [exp] 117 / 7e-30 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10016749 [exp] 116 / 8e-30 AT3G02230 570 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10036970 [exp] 116 / 1e-29 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10000646 [exp] 115 / 2e-29 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10004640 [exp] 115 / 3e-29 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 115 / 3e-29 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10017868 [exp] 113 / 1e-28 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10005076 [exp] 109 / 5e-27 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034376 [exp] 108 / 5e-27 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10029957 [exp] 85 / 4e-19 AT1G62422 141 / 2e-42 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03214 [poplar] [flax] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Potri.015G099400.2 pacid=42775935 polypeptide=Potri.015G099400.2.p locus=Potri.015G099400 ID=Potri.015G099400.2.v4.1 annot-version=v4.1 ATGCTAACCAAGAAAATGAAGGTTGAGAGAAAAGGCAAAGCGTACCCATCCCAACCTTCAGCATCATCATCAAGATTTTCATATAAAGATCCTGACTCGG TGTTAAAGCTTCTACCAGTAACTATTCTAGCTCTAGCCCTCTCTCTTCCTAACCAGGACCGTGAAGTTCTAGCTTATTTGATAGCAAGGTCCATCTTTGT CACCACCGCACCAAACCCATCTTCACTTATAACCCAGCATCCAAAAAAGAAATGTAAAACCAAGAGTACTGCCAGCAAGAATGACAAATATTGTGACCAG AAAGTTCCTTCTTTTCAATGTGGGTGTTTTGATTGCTACACTAGGTTTTGGTATAGATGGGACTCATCTCCAAATAGGGATTTCATCCACCAAGTTATCG AACCATTTGAAGAGCATTTGGTGCAAAAAATTGAGTCCTCAAAGAAGCACAGCAGAGGCAAGAAGAAAGGTAAGGTCTTGATGATGGGCCATTTTGAATC TGATAATGTTTTGTTTAATATACCTGAAATAGCAGTGCCTAAAACTGTATGCGAAGTGATGATAATGCAAGAAAATCTTGAAAGTGGAGAGATCGAGGGA AATGGGGTTGTCTTCGAAGAGGAGATGGTGGGTCAGGAGGTGACTAGGAACCTGGAAATGGAGGTGGTGACAGGACATCCTTCAGGCTACAATGATAACA ACCACAAGGGTTTGGCTATGAAGGTTTTACTGGACGTAATGGGTTTACTGAACTCTCGTTTATGGAGTAATCTTTGGAGTCCTGGCATGTATGTGGATGC TGTTTTGACAATCCCAAAAGGCACACTATTCCCAACGTGTGGAATGAACCTTGCCTTTGACAGGGAATTGATTGGCCCTGCAATCTACTTTGGACCCATG GGTGATGGTCAACCCATTGGGAGATATGATGATGTGTGGGCTGGCTGGTGTGCCAAGTGTCTTAGGAGCTAA
AA sequence Show only first row Show all	>Potri.015G099400.2 pacid=42775935 polypeptide=Potri.015G099400.2.p locus=Potri.015G099400 ID=Potri.015G099400.2.v4.1 annot-version=v4.1 MLTKKMKVERKGKAYPSQPSASSSRFSYKDPDSVLKLLPVTILALALSLPNQDREVLAYLIARSIFVTTAPNPSSLITQHPKKKCKTKSTASKNDKYCDQ KVPSFQCGCFDCYTRFWYRWDSSPNRDFIHQVIEPFEEHLVQKIESSKKHSRGKKKGKVLMMGHFESDNVLFNIPEIAVPKTVCEVMIMQENLESGEIEG NGVVFEEEMVGQEVTRNLEMEVVTGHPSGYNDNNHKGLAMKVLLDVMGLLNSRLWSNLWSPGMYVDAVLTIPKGTLFPTCGMNLAFDRELIGPAIYFGPM GDGQPIGRYDDVWAGWCAKCLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G099400 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	2.44	0.8299
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	3.31	0.8526
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	3.87	0.8084
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.004G010500 [exp]	5.29	0.7975
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	7.07	0.7950
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	9.79	0.7872
AT2G18910			hydroxyproline-rich glycoprote...		Potri.006G166400 [exp]	20.56	0.7799
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	22.13	0.7630	I.2
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	26.92	0.7491
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	27.94	0.7658

Compare expression of checked genes

Potri.015G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.