Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 285 / 2e-95 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 285 / 2e-95 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 285 / 4e-95 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT5G50690 269 / 2e-89 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 269 / 2e-89 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47360 261 / 2e-86 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G47350 261 / 2e-86 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT4G10020 225 / 3e-71 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G03330 97 / 8e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 79 / 6e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 474 / 2e-170 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 445 / 7e-159 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 328 / 1e-112 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 303 / 6e-103 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 296 / 6e-100 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.013G100200 [exp] 220 / 8e-70 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 215 / 7e-68 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.010G056100 [exp] 83 / 6e-18 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 82 / 8e-18 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022441 [exp] 288 / 8e-97 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10016748 [exp] 289 / 5e-95 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 281 / 3e-94 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10032556 [exp] 270 / 2e-89 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 265 / 4e-87 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 263 / 3e-86 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 262 / 4e-86 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10006178 [exp] 197 / 1e-60 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 197 / 3e-60 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 197 / 4e-60 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.015G099900.1 pacid=42776583 polypeptide=Potri.015G099900.1.p locus=Potri.015G099900 ID=Potri.015G099900.1.v4.1 annot-version=v4.1 ATGGATTTGATCCACAAAGTCCTGAACATTGTACTTCCTCCTATAACATTGATTCTGCTACTTCTCTTCTTGCCGTCCTTTCTTGTTTCCAAGTTCATAA GTCGTATAAAAAGATCAATAAACAGCGAAAAGGTGGCAGGAAAAGTAGTTCTAATCACCGGTGCATCCTCAGGCATTGGCGAGTATCTTGCATATGAGTA TGCTAGGAGAGGAGCATGTTTAGCCCTTGCTGCTAGAAGACAGGAGCGTCTTCGAGCAGTTGCTGGTAAGGCAAGGGCGCTGGGTTCACCAGATGTTATA GTCATCCCCACTGACATTTCGAAGGTTGAAGACTCTGAGAGGTTTATTAACGAAGCAGTGAATCATTTTGGCAAGTTGGATCATCTGGTGAACAATGCTG GTGTTGTTCAAATTGACATGTTTGAGGATTGCAAGCAAATATCAGATTTTGCAACACTTACGGACACAAATTTCTGGGGTTCCGTTTACACCACCCATTT CGCTATTCCACACCTAAGAAAAAGTAAAGGGAGGATTGTAGGGATTTCTTCAATTGCTGGATGGTTCACAGTGCCTAGGATGAGCTTCTATTGCGCAAGC AAAGCAGCCATAACAAGTTTTTATGAGACACTACGTGCTGAATTTGGTTCGGATATTGGAATAACAATCGTCACTCCTGGTGTAGTCGAGTCAGAAATGA GCCAAGGCGATTTTTTGTCAAAGGCCCAGATAGACTTTGTCCCGGCCGAGTCGACCGAGAGGTGTGCTAAAGCAATCGTGGACAGCGCTTGCCGAGGAGA TAGATACTTAACAGAGCCGTCTTGGGCAAGAATGACGTTTCTGCTGAAAGTCCTTTGTCCTGAAGTGCTGGAGTGGTTGTTCCACATGGTATTGGTTGCT AAGAGTTCAAAGAAAAGTAACTAG
AA sequence Show only first row Show all	>Potri.015G099900.1 pacid=42776583 polypeptide=Potri.015G099900.1.p locus=Potri.015G099900 ID=Potri.015G099900.1.v4.1 annot-version=v4.1 MDLIHKVLNIVLPPITLILLLLFLPSFLVSKFISRIKRSINSEKVAGKVVLITGASSGIGEYLAYEYARRGACLALAARRQERLRAVAGKARALGSPDVI VIPTDISKVEDSERFINEAVNHFGKLDHLVNNAGVVQIDMFEDCKQISDFATLTDTNFWGSVYTTHFAIPHLRKSKGRIVGISSIAGWFTVPRMSFYCAS KAAITSFYETLRAEFGSDIGITIVTPGVVESEMSQGDFLSKAQIDFVPAESTERCAKAIVDSACRGDRYLTEPSWARMTFLLKVLCPEVLEWLFHMVLVA KSSKKSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.015G099900 [exp]	0	1
AT1G72030			Acyl-CoA N-acyltransferases (N...		Potri.005G054600 [exp]	1.73	0.9748
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.008G165400 [exp]	2.00	0.9735
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.003G093700 [exp]	2.44	0.9770
					Potri.003G082300 [exp]	2.44	0.9798
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	4.58	0.9660
AT3G29240			Protein of unknown function (D...		Potri.004G125800 [exp]	5.19	0.9612
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.005G075400 [exp]	5.65	0.9632
AT4G27360			Dynein light chain type 1 fami...		Potri.001G407900 [exp]	9.48	0.9538
AT1G44000			unknown protein		Potri.005G184700 [exp]	9.53	0.9542
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.001G191800 [exp]	11.40	0.9280

Compare expression of checked genes

Potri.015G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.