Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63540 468 / 2e-158 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) AT5G19950 66 / 4e-11 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073100 [exp] 50 / 3e-06 AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022440 [exp] 562 / 0 AT5G63540 452 / 1e-151 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10016747 [exp] 366 / 4e-121 AT5G63540 297 / 5e-94 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10019397 [exp] 49 / 9e-06 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10043254 [exp] 49 / 1e-05 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF08585 [poplar] [flax] RMI1_N RecQ mediated genome instability protein CL0021 [poplar] [flax] OB PF16099 [poplar] [flax] RMI1_C Recq-mediated genome instability protein 1, C-terminal OB-fold
Representative CDS sequence Show only first row Show all	>Potri.015G100200.3 pacid=42775103 polypeptide=Potri.015G100200.3.p locus=Potri.015G100200 ID=Potri.015G100200.3.v4.1 annot-version=v4.1 ATGACAAGACGACGCCTCAGACTCAGCTCTTACTCCGACGACGACGACGACGAAGAAGAACAGCAAAACCACCAACAAGATTATCAAATGGAATCTCACC AATTACCAAACCCTAACCCTAACCTCCCTGAACAACCAGTGCCACTTCCAATCTCCTCCGACGATGCTGAATTCGCCGACGCCTCCGATAACCTCACTCC ACCGTCTCCTCCGTATCCTCCGTCGGTGGCTCCACCCATATCCGGTTGTCCTATTGGGGATTTTCTACTGAGAACGGGACTTAGTTTAAAAAGAGAGTGG CTTGATTCCTGTCTTCGCCAAATTGACAACTCGCTTGACATAGTGTCAAAGGCTAAGATTTGCTTCGGTCAGTTTTTGATTTCAGATATGAATCACTGCG GTGCTGGTGTGCTTCCTCCAAATGTGGACTCTATGCACCTTGCTGATCTCCCCGGACCGTTTGTGTTGCAGGTGGATGAGATTGTTAACATTAGTTGTCC ACTTAAAGGAAGGTATCAGGATGCGAATGCGGGAGTGAAGAGGTGCCTTAAGCTGTCTATGACGGATGGTGTCCAACGTGTTTTTGGCATGGAATATAGG TCTATTAAGGATCTTAAAGTTTTAGCTCCTCCAGGATTCAAGGTTGCTATCTGTAATGTACATATACGGCGTGGGCTTTTAATGTTGGTTCCTGAAGCTT TAGCAATTTTAGGAGGAGTGGTTGAAGAGTTGGATGCAGCACGTCAACGTCTTGCTGATGAGATAAATAAACCACCAAGGGGAAGAAGATCAAGGACTGG AGAGGTTCCTCCTTTAGCAACTAGAGCAACTCAGGCTGCATGGGCCCCTAATGGAGTCAATATTCCCAGTAGCACCAATAACTCAGGTAATGTTCCTGGG CATACAAATACCTCAGCGGATGATCTTCAGAACACCAATGGTTCTGGTAATGCCCTGGGACGCACCAATAGTTCTGTCAAAGTTGTTCAACATACTGATA GATCCACATTACGAGTTGCAACTCCCTTTCAGGAAGATGGACGAGGTGCCAATTTGGTTGTATCTGGCACTGATACTAGTCAAAGGACTGTGGAAGAATG TGCTGTTCCAATGAGTGCAGAAACCACTATGTGTAATCTATCATCTAGTATTGTTTCCGATGTTGGGGAGATGCATATCAATTCTCCTATAAGTGGGGTG AATTCTGTGTCTAACCAACACTCTAATGGTACTTTGGAGCAAGAGGATGTCTGCATGATTGATGAATTTGAACACCCCCTCATATTATCTAGAGACCGAG AAATCCCATTCACATACTTGGCTAGTTTGTCAGCTAAATGGGCAGCAATGAAGGAGAAAGAACCTTCTGTTAGAGGAAAGATCAAGTGCTTCTTGACTGG TGTAAAGGGATTCCAATATAAGCAGAGGACGACATATGAGCTTCAGGTTTATGTTGATGATGGCAGCCTCATTTCTGAGATCCTAATTGATCACAATGTA GTGCTGAAAGGAATAGGTTGTTCTCCTGTGGAGGTTACCACTGCTCTTTCTTCGTCAGATAAAAAGAGAGCTGGTGAAATGAAGGAGACCCTGAGACAGT TTCAGATGTTCTTAGTGAATTTTGAGGGAACAATGCTCATAGAGATAAATGGAGCCTCTAAACTTCCTGTTGCTCTTGAGATGAACCAAGGCTGTCCTCC TTCTGATGCATGGTTGCTTATGAGAAGACTGAAGTCCTTTTCTTCTTCCCTAACACCACAGCATTCCTCCATGGGACCTATTGATATATCACCGTAA
AA sequence Show only first row Show all	>Potri.015G100200.3 pacid=42775103 polypeptide=Potri.015G100200.3.p locus=Potri.015G100200 ID=Potri.015G100200.3.v4.1 annot-version=v4.1 MTRRRLRLSSYSDDDDDEEEQQNHQQDYQMESHQLPNPNPNLPEQPVPLPISSDDAEFADASDNLTPPSPPYPPSVAPPISGCPIGDFLLRTGLSLKREW LDSCLRQIDNSLDIVSKAKICFGQFLISDMNHCGAGVLPPNVDSMHLADLPGPFVLQVDEIVNISCPLKGRYQDANAGVKRCLKLSMTDGVQRVFGMEYR SIKDLKVLAPPGFKVAICNVHIRRGLLMLVPEALAILGGVVEELDAARQRLADEINKPPRGRRSRTGEVPPLATRATQAAWAPNGVNIPSSTNNSGNVPG HTNTSADDLQNTNGSGNALGRTNSSVKVVQHTDRSTLRVATPFQEDGRGANLVVSGTDTSQRTVEECAVPMSAETTMCNLSSSIVSDVGEMHINSPISGV NSVSNQHSNGTLEQEDVCMIDEFEHPLILSRDREIPFTYLASLSAKWAAMKEKEPSVRGKIKCFLTGVKGFQYKQRTTYELQVYVDDGSLISEILIDHNV VLKGIGCSPVEVTTALSSSDKKRAGEMKETLRQFQMFLVNFEGTMLIEINGASKLPVALEMNQGCPPSDAWLLMRRLKSFSSSLTPQHSSMGPIDISP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Potri.015G100200 [exp]	0	1
					Potri.018G096021 [exp]	5.38	0.8493
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	6.48	0.8365
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	7.41	0.8303
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	9.69	0.8465
AT1G48620		HON5	high mobility group A5 (.1)		Potri.015G040200 [exp]	11.66	0.8095
					Potri.019G059350 [exp]	12.96	0.8347
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	14.14	0.8278
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.002G195066 [exp]	15.87	0.8262
					Potri.003G193100 [exp]	16.34	0.7429
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043200 [exp]	19.49	0.8237	CBP60.11

Compare expression of checked genes

Potri.015G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.