Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 482 / 4e-169 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 463 / 7e-162 ACR6 ACT domain repeat 6 (.1) AT2G03730 443 / 1e-153 ACR5 ACT domain repeat 5 (.1.2) AT1G12420 369 / 6e-125 ACR8 ACT domain repeat 8 (.1) AT1G76990 366 / 1e-123 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT4G22780 356 / 1e-119 ACR7 ACT domain repeat 7 (.1) AT5G25320 340 / 1e-112 ACT-like superfamily protein (.1) AT5G65890 295 / 1e-95 ACR1 ACT domain repeat 1 (.1.2) AT5G04740 62 / 1e-10 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G16880 56 / 2e-08 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083000 [exp] 753 / 0 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 716 / 0 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 525 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.T124144 [exp] 504 / 9e-178 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 503 / 1e-176 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 500 / 3e-176 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 414 / 2e-142 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 399 / 1e-136 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 394 / 1e-134 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012550 [exp] 520 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 512 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 484 / 6e-170 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 410 / 1e-140 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 407 / 1e-139 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 375 / 7e-127 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 378 / 2e-125 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 307 / 4e-100 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 289 / 7e-96 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 223 / 1e-68 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.015G100300.1 pacid=42775908 polypeptide=Potri.015G100300.1.p locus=Potri.015G100300 ID=Potri.015G100300.1.v4.1 annot-version=v4.1 ATGGATTACCATGATGATGATGCATATGCTAAACTTTTAAGGAGAGTGAACTCTCCAAGAGTTGTGGTTGACAATGATGCCTGTGAGCATGCAACAGTCA TTCAGGTGGATACTGTCAAAAGGCAAGGTGCTCTACTTGAAGTTGTTCAAGTTCTCACAGACCTAAACCTTGTAATGACAAAAGCATACATGTCTTCTGA TGGAGTGTGGTTCATGAACGTGTTTTATGTGACTGATGACCATGGAAACAAAATCAGAGATGAAGACATCGTCAATTGCATAGAGAAGGCTCTTGAGACT GATGCTTGCATGGTTAAGTCAACGGGGAAGATGCTGCCTTCTAAAGAGCACACATTAATAGAACTGACCGGCACTGACCGGCCTGGTTTGTTGTCAGAAG TATGTGCCGTGCTGACCGACCTGAGGTGCAATGTTGTCAATGCGGAGATTTGGGCACACAATGGTAGAGCAGCAGCAGTCATTCACATTGCAGACCAGTC AACTGGAACTGCAATCGAAGACCCAAGGAAGCTTTCCTTGATAAAGGAACTTCTTTATAATGTCCTAAAAGGTCATGGCGATTTTAGGACACCAATAGTT TCCATTTCTTCCCCTGGGGAAATACATATAGGGAGAAGGTTGCACCAGATGATGTTTGCTGCTAGGGACTTTGAAAGGCCTGGCAGCGAGAACGACAACA GTGTAAGGCCCTACGTGACTGTGTTCGACTGTCCTGATAGAGATTACACTGTTGTTACAGCAACATCCATCGACCGGCCAAAGTTAGTGTTTGATACCGT GTGCACTCTAACAGACATGCAGTATCTGGTGTTCCATGGCACAGTCATCACAGATAGCAAGAAAGCTTATCAGGAATACTATATCAGACATGTGGATGGA TTCCCTACAAGCTCAGAAGCTGAGCGACAACGTGTCATAGAATGTATTCAGGCAGCCATTGAAAGGCGAGCATCAGAGGGTCTACCACTAGAGCTATTCA CAGATGACCATTTTGGACTTCTCTCTTATATTACAAGGATACTTCGTGAAAACGGTTTGTGGCCCAAAAGTGCAGAAATCTCGACAAGGAATGGGAAAGC AAAACATAGTTATATTGTCACAGATGTGTCTGGTAACCCTGTTGACCCCAAAACTATCCTTCTGATTCACCAGCAAATGGGACAAACCGTGTTACAGGTG AAGGGGAATTTGAGCATGCCACCGAAATTTCGGGAGACACCAAGAAGTTTCCTCTTTGGGGCCCTTTTCAGATGCCCAAGTTTCCAGAATTTTGGACTCA ACTAA
AA sequence Show only first row Show all	>Potri.015G100300.1 pacid=42775908 polypeptide=Potri.015G100300.1.p locus=Potri.015G100300 ID=Potri.015G100300.1.v4.1 annot-version=v4.1 MDYHDDDAYAKLLRRVNSPRVVVDNDACEHATVIQVDTVKRQGALLEVVQVLTDLNLVMTKAYMSSDGVWFMNVFYVTDDHGNKIRDEDIVNCIEKALET DACMVKSTGKMLPSKEHTLIELTGTDRPGLLSEVCAVLTDLRCNVVNAEIWAHNGRAAAVIHIADQSTGTAIEDPRKLSLIKELLYNVLKGHGDFRTPIV SISSPGEIHIGRRLHQMMFAARDFERPGSENDNSVRPYVTVFDCPDRDYTVVTATSIDRPKLVFDTVCTLTDMQYLVFHGTVITDSKKAYQEYYIRHVDG FPTSSEAERQRVIECIQAAIERRASEGLPLELFTDDHFGLLSYITRILRENGLWPKSAEISTRNGKAKHSYIVTDVSGNPVDPKTILLIHQQMGQTVLQV KGNLSMPPKFRETPRSFLFGALFRCPSFQNFGLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.015G100300 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.018G065400 [exp]	1.00	0.8136
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	13.85	0.7796
AT1G69600	ZF_HD	ATHB29, ZFHD1, ...	ZINC FINGER HOMEODOMAIN 11, AR...		Potri.015G032700 [exp]	14.07	0.7958
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	15.00	0.7219
AT1G11200			Protein of unknown function (D...		Potri.011G044200 [exp]	17.23	0.7810
AT2G29125		RTFL2, DVL13	DEVIL 13, ROTUNDIFOLIA like 2 ...		Potri.009G034300 [exp]	18.49	0.7672
AT4G24275			unknown protein		Potri.019G078000 [exp]	24.39	0.7094
AT3G55240			Plant protein 1589 of unknown ...		Potri.010G211500 [exp]	25.90	0.6904
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	29.98	0.7172
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	34.64	0.7237	Pt-RPT2.4

Compare expression of checked genes

Potri.015G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.