Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102400 [exp] 474 / 3e-170 ND / Potri.015G100600 [exp] 318 / 1e-108 ND / Potri.001G341700 [exp] 309 / 2e-105 ND / Potri.005G059400 [exp] 173 / 3e-52 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038478 [exp] 296 / 3e-100 ND / Lus10023333 [exp] 290 / 8e-98 ND / Lus10031949 [exp] 284 / 3e-95 ND / Lus10005172 [exp] 174 / 2e-52 ND / Lus10038131 [exp] 92 / 3e-21 ND / Lus10022997 [exp] 47 / 2e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.015G100500.1 pacid=42775254 polypeptide=Potri.015G100500.1.p locus=Potri.015G100500 ID=Potri.015G100500.1.v4.1 annot-version=v4.1 ATGGAGTTTTCAATATTGTTGCTCATCACCACCCTTGTTGTTCTCCAAGCTATTTTCCCCTCTCATGCATCAATCCAAGCAGCCCCTGCAAACTCAAACC TCTTCCGTGAATACATTGGAGCCGAGTCCAATAATGTCAGATTCACCGACGTTCCTATCAGCCCAGATGTTGAATTCCATTTCATCCTTTCTTTTGCCAT AGACCATGACACCTCGAATTCTCCTTCGTCCACCAATGGAAAATTCAACATCTTTTGGGACTCCGATAATCTAAGCCCTTCTCAGGTTTCTTCTATCAAG AACCGCCATTCCAATGTCAAAGTTGCCTTGAGTCTTGGAGGGGATAGAGTAGAGAATGGCTATGCTTACTTTAATCCTCCCTCGGTTAATTCATGGGTAT CTAATGCTGTTTCTTCACTCACACGGATCATTAAGCAGTATAATTTGGATGGGATTGATATTGATTACGAGCACTTTCAAGCTGATCCTGAGACATTTGC AGAGTGCACAGGACAACTCATTGCAGCCCTTAAGAGGAATGGGGTCATCTCATTTGCCTCTATAGCTCCTTTCGATGATGACCAAGTTCAAAACCATTAC CTGGCCTTATGGAGGAAATATGGGCATCAAATAGACTACGTCAACTTCCAATTTTATGCATATGATCAGGGTACCTCAGAATCCCAGTTTCTGGATTACT TCAAAACCCAGACTTCTAAATACATTGGTGGTAAAGTCTTGGTGAGCTTTATCAGTGATGGAAGCGGCGGGCTATCTCCATCAGATGGCTTCTTTACAGC CTGCAGTAAGCTTAAGAGTCAGAAGCAACTCCAAGGGATTTTCGTTTGGTCAGCAGATGACTCTAAGGCCGAGGGTTTCCGCTACGAAAAGCAGTCGCAA GCCCTACTAGCAATTCATCACTAG
AA sequence Show only first row Show all	>Potri.015G100500.1 pacid=42775254 polypeptide=Potri.015G100500.1.p locus=Potri.015G100500 ID=Potri.015G100500.1.v4.1 annot-version=v4.1 MEFSILLLITTLVVLQAIFPSHASIQAAPANSNLFREYIGAESNNVRFTDVPISPDVEFHFILSFAIDHDTSNSPSSTNGKFNIFWDSDNLSPSQVSSIK NRHSNVKVALSLGGDRVENGYAYFNPPSVNSWVSNAVSSLTRIIKQYNLDGIDIDYEHFQADPETFAECTGQLIAALKRNGVISFASIAPFDDDQVQNHY LALWRKYGHQIDYVNFQFYAYDQGTSESQFLDYFKTQTSKYIGGKVLVSFISDGSGGLSPSDGFFTACSKLKSQKQLQGIFVWSADDSKAEGFRYEKQSQ ALLAIHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.015G100500 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	15.74	0.7881
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126500 [exp]	19.74	0.7595
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.001G355900 [exp]	28.07	0.7611
AT3G18360			VQ motif-containing protein (....		Potri.012G055900 [exp]	41.42	0.7509
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.016G027900 [exp]	69.35	0.6975
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.019G047480 [exp]	87.99	0.6514
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	89.73	0.7012
AT3G05390			unknown protein		Potri.004G232200 [exp]	104.03	0.6809
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	119.47	0.6874
AT1G19900			glyoxal oxidase-related protei...		Potri.005G235600 [exp]	122.74	0.6660

Compare expression of checked genes

Potri.015G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.