Plant FIBer expression Database

Potri.015G100700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63550 245 / 5e-74 DEK domain-containing chromatin associated protein (.1.2)
AT3G48710 242 / 1e-73 DEK domain-containing chromatin associated protein (.1)
AT5G55660 176 / 6e-47 DEK domain-containing chromatin associated protein (.1)
AT4G26630 156 / 3e-40 DEK domain-containing chromatin associated protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G102500
[exp]
385 / 2e-127 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2)
Potri.011G093200
[exp]
207 / 5e-59 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2)
Potri.001G367400
[exp]
194 / 2e-54 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035905
[exp]
294 / 3e-91 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1)
Lus10025759
[exp]
296 / 2e-90 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1)
Lus10022439
[exp]
287 / 2e-88 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1)
Lus10016746
[exp]
211 / 9e-61 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08766 DEK_C DEK C terminal domain
Representative CDS sequence
>Potri.015G100700.1 pacid=42776665 polypeptide=Potri.015G100700.1.p locus=Potri.015G100700 ID=Potri.015G100700.1.v4.1 annot-version=v4.1
ATGGCGAGTGAAACCCTAGAAGAGAAGAAACCAGGGCAGGAAGCTCCTCCTGGTGAGGATTCAAAACCAGATGCACAAAAGGAGCAAACTGAAAGCGAAG
GACCGAAGGAGGGTACAGAGAATGAAGCGAAGGAGGCTGACAACGAGGAAGTGAAAGAAGTAGAGAAGATTGAGAAGGAGGGAGCTGAAAAGGAGGAGTC
TTTTGGAAATGAGGAGAAAGAAGAAGAAGCGAAAGAAGAGGAAGAGGTAGAGAGAAAGAAAACTAAGCGAGGAAGCAAGAAATCGAGTAAAGATTTGACT
GAGAAGAAGGAGAAGGAGCCGGTGACTCCAGGTAGTGAGAGGCCTGCCAGAGAGAGGAAGATGGTGGAAAGGTACTCTGCTCCTGAGCCTGGACGGTCAG
CGACCAAGCCTTTGTCTATTGAAAAGGGACGAGGAACACCACTGAAGGATATTCCTAATGTGGCTTTCAAGTTGTCCAAGAGAAAACCTGATGACAATCT
ACAGATGCTTCATATGATTCTGTTTGGAAAGAAAGGAAAGGCATACAATCTAAAGAAAAACATAGGCCAGTTTTCAGGCTATGTGTGGGTTGAGAATGAG
GATAAGCAGAAAGCAAAAGTAAGGGAAAAGCTTGACAAGTGCGTCAAAGAGAAGTTGATGGATTTTTGTGATGTGCTCAATGTCCCTATAAATAGGTCTG
CTGTGAAAAAGGAGGAACTCACTGTAAAAATATTGGAATTCTTGGAATCCCCTCATGCCACCACTGATGTTCTGCTTGCTGACAAGGAACAGAAAGGTAA
GAAGCGTAAGGTCTCAACCGGAAAAAATGCAAGTCCTGTAGAAGCATCAACTACACCAGCAAAGAAACAAAAACAAACACCCCAAAGTGGACAAAAGCGA
AAGCGTTCATCCAAAGATGAGGAAGATGATGATGAAGATAAAGTTGAATCACCAGTTGCTAAAGATGATTCAGAAGAGGATGATGAAAATGAGGCAGAAA
AGAAAGAAGAGAGTGATCATGAGGAGAGCAAATCAGAGGAAGAGGAAGATGAGCCAAAGGAGCAGACGCCACCTAAGAAGATATCAAAAAAATCTGCAAA
GCAGAGTTCAGCGGTTAAAGGTGCAGAGAAAGTTACGCCTAGCAAAAAGAGCACCCCTGCAAAGCCTGTCAAAAGTCCAGTAAAATCTACCAAAAATACT
TCTGGCTCATCATCAAAAAGGGGCGCTAAAGATACTGATGGAAGTTCCAGTTCTGTTTCTAAATCAAAGGTATCTGCATCTAAGAAACTTAAGGTTGAAA
AGGAAAACCCTAAGGACCGAAGCGCTTCGTCCAAGGACAAGGTCACTGGCAAGAAGCAGTCGACTAAGTCCCCATCAAAGGATACTGCAAAAGATCAAGG
TAAAGTCAAGTCTAACAAAAGGGCCAAGGCAGAACCCACCAGACAAGAGATGCATGCAGTTGTAGTAAATATTCTGAAGGAAGTGGATTTCAATACTGCA
ACTCTATCAGATATTCTCAGACAGCTTGGTACCCACTTTGGCATAGATCTAATGCATAGAAAAGCGGAAGTGAAGGATATTATTACAGATGTGATAAATA
GCATGTCTGATGATGAAGAAGAAGGTGAAGGGGAGGACGCGGAGGATAATGCTGAGGGTGGTGATGATGCAGATAAAGATGCTGACGAGGATGATGATTA
G
AA sequence
>Potri.015G100700.1 pacid=42776665 polypeptide=Potri.015G100700.1.p locus=Potri.015G100700 ID=Potri.015G100700.1.v4.1 annot-version=v4.1
MASETLEEKKPGQEAPPGEDSKPDAQKEQTESEGPKEGTENEAKEADNEEVKEVEKIEKEGAEKEESFGNEEKEEEAKEEEEVERKKTKRGSKKSSKDLT
EKKEKEPVTPGSERPARERKMVERYSAPEPGRSATKPLSIEKGRGTPLKDIPNVAFKLSKRKPDDNLQMLHMILFGKKGKAYNLKKNIGQFSGYVWVENE
DKQKAKVREKLDKCVKEKLMDFCDVLNVPINRSAVKKEELTVKILEFLESPHATTDVLLADKEQKGKKRKVSTGKNASPVEASTTPAKKQKQTPQSGQKR
KRSSKDEEDDDEDKVESPVAKDDSEEDDENEAEKKEESDHEESKSEEEEDEPKEQTPPKKISKKSAKQSSAVKGAEKVTPSKKSTPAKPVKSPVKSTKNT
SGSSSKRGAKDTDGSSSSVSKSKVSASKKLKVEKENPKDRSASSKDKVTGKKQSTKSPSKDTAKDQGKVKSNKRAKAEPTRQEMHAVVVNILKEVDFNTA
TLSDILRQLGTHFGIDLMHRKAEVKDIITDVINSMSDDEEEGEGEDAEDNAEGGDDADKDADEDDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63550 DEK domain-containing chromati... Potri.015G100700
[exp]
0 1
AT5G63550 DEK domain-containing chromati... Potri.012G102500
[exp]
1.41 0.8435
AT4G37130 hydroxyproline-rich glycoprote... Potri.007G036600
[exp]
3.87 0.8007
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
4.47 0.7984
AT1G34320 Protein of unknown function (D... Potri.019G085900
[exp]
4.47 0.8090
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.006G212400
[exp]
5.29 0.7932
AT3G04820 Pseudouridine synthase family ... Potri.005G051400
[exp]
8.94 0.8004
AT4G17895 UBP20 ubiquitin-specific protease 20... Potri.003G092400
[exp]
11.22 0.7432 Pt-UBP21.1
AT1G09770 MYB ATCDC5, AtMYBCD... ARABIDOPSIS THALIANA MYB DOMAI... Potri.019G018400
[exp]
11.66 0.7665
AT5G63260 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.015G089100
[exp]
14.83 0.7325
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Potri.005G135500
[exp]
19.79 0.7371

Potri.015G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.