Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24970 774 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 760 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 614 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36280 443 / 1e-145 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36290 440 / 2e-144 CRT1 compromised recognition of TCV 1 (.1) AT1G19100 428 / 2e-139 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 314 / 4e-98 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102800 [exp] 1314 / 0 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 682 / 0 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 458 / 6e-151 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.012G089000 [exp] 445 / 3e-145 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 434 / 4e-142 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 93 / 3e-19 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022438 [exp] 803 / 0 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 773 / 0 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10041578 [exp] 667 / 0 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 448 / 6e-148 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10039959 [exp] 412 / 1e-133 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 412 / 3e-131 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 333 / 2e-104 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 328 / 1e-103 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.015G100900.2 pacid=42776152 polypeptide=Potri.015G100900.2.p locus=Potri.015G100900 ID=Potri.015G100900.2.v4.1 annot-version=v4.1 ATGGATGGTATTGGTAATGTAAAGCAAGAGATTCTTGAACCTTCACCTAATCGACAAAACGCCACCGTTTCGGGAGTTCCAGACGCCGTCATCGAACTCA GTAGCAGCAGTGAAAGCAGTAGCGGTAGTGACAGTGAGTCGGAAACCGAGTTAGATGGAAACAGCGTTGTCTCTAAGAGACAGTGGGACTCTAATGGTGG TGATGGAGGTTCTGAGATGAAGAAGAAGAAGAAGAGGAGAAGGAATTTGGATGATTTAGGTGTTGTGTTGCCGTTGGGGTTTCTCGCTCCACTTCCGCAA CCGCCGTCTTCAGAGCCGCCCACTGAAGCGGAGATGGCTGTGGTGGAGTCGACGGAGAGTACGATGGTGAATTTGATTGGTCAAAGCAGCAAGCAATTCT GGAAAGCGGGTGATTATGAGGGTGCTCCTCATGCTAATTGGGATTTATCTTCTGGTGGAATGGATCGTGTTAGGGTTCATCCAAAATTTTTGCATTCTAA TGCAACTAGTCATAAATGGGCACTTGGAGCATTTGCGGAACTTATGGACAATGCATTGGATGAGTTTGGCAATGGAGCTACGTTTGTTAACATAGATATG GTTGAAAGTAAGAAGGATCGCAGCAGAATGCTTTTGATTGAAGATAATGGCGGTGGAATGGATCCAGATAAAATGCGACAATGCATGTCCTTGGGTTATT CTGCAAAAAGCAAAGTGGCGAACACCATTGGACAATATGGCAATGGATTTAAGACAAGTACCATGAGGCTTGGAGCAGATGTCATTGTGTTTTCACGTTG TCCAGGAAAAGATGGAAAAAGTCCTACACAGAGCATTGGATTGCTATCATACACTTTTTTGAGGAGCACGGGGAAAGAAGATATTGTGGTGCCCATGCTT GACTTTCAAAGAAAGGGGCGGGAATGGAGCAGGATGATACGGTACTCTGCTAGTGATTGGAATAGAAATGTAGAGACGATAGTTTGTTGGTCTCCATTTT CCAGCGAGGCAGACCTTCTTCGTCAGTTTAATCTTATGTCAGATCATGGGACGCGAATAATTATATACAATCTTTGGGAGGATGACCAGGGATTGTTGGA ACTTGATTTTGACAGTGATCCTCATGATATCCAACTAAGAGGTGTCAATCGAGATGAGAAGCATATAAAAATGGCGAAAGAGTTTCCCAATTCCAGACAC TTCCTTACTTATAGGCACTCATTAAGGAATTATGCCTCAATTCTCTATCTCAGACTGCCTTCCAGCTTTCGAATCATTCTCCGTGGGAAAGATGTTGAGC ACCACAATATAGTGAATGATATGATGCTATCGCAGGAGGTAACATATCGGCCACAGCCTGGCGCAGATGGTGTCCCAAAAGACACAAATATGACTGCTGT TGTCACTATTGGCTTTGTGAAGGATGCAAAGCATCATATTGATGTTCAAGGATTCAACGTTTATCACAAAAATCGACTAATTAAGCCATTTTGGAGGCTT TGGAATGCCGCAGGAAGTGATGGACGTGGAGTAATAGGTGTGTTGGAAGCTAATTTTGTTGAGCCAGCTCATGATAAGCAAGGATTTGAACGCACAACAG TTCTTGCAAGACTAGAAGCTCGATTAGTACAAATGCAAAAACAATACTGGAGCACTTACTGTCACAAAATTGGTTATGCTCCAAGGCGAAATAAGAAACT CATAAATGAGTTCTCAGATATAGAAACTTCTCCTGGCTATCAACCACCCACATCTTCTCATTCTAGAAAGAAGTATACTTCCTTGGGCAGTAAGATATCC CCTTCACATTCCGACCATGGGTATGGCAATGGGCATGCCTCCAACAAAGTGAATGTTAGAACAAATACCCCAACCAAATTTGGAAAAAGCACCATATCGC CTGGACCATCACCTCCTGCTCAGGATGTTAGCAGTGAAGATGATGACTGTGTTGCTATTCCTGTAAGAAAAGCAAATGGGAGCACTCAAAGGACCACTCC TACCAACAAGTCTTTTGAGAAAGATGGGTTGCATGCAACTCAGTCGTCTTCATGCATGGAAGATTCTGGATCTCAGCATGATTGCATGTCTGGAGGGGGG ACTGTTCATACTGTCACAAGATCCCAAACAAAGGTGGGTGATGTTGATAAGATGGATTGTTCCTTTTCAGAATCCGATGTGCTTGCCCTTGTTCATTTGA AACAAGAGAATCGTGAACTAAAAGAAAGATTAGAGAAATTGGAAGGAGAGACTCGAGGGGAGTACAGGAATGGCTCTCAGTGTGAGAAGTGTAAATCTCT TGAGATACAGTTGCAGGAAGCGCAGCGAAAGCTTGAAGAATTGAACAAGGAACAGGAAAGTCTGATTGATATATTCTCAGAGGAGAGGGTCAGGCGAGAC CAGGAGGAGGAGAATTTGAGAAAGAAGCTTAAGGATGCATCAAATACCATTCAAGAGTTGCTTGACAAGGTCAGGCTGTTGGAGAAGATGAAATCTCCTT ATCTCAAAGGACGTTGA
AA sequence Show only first row Show all	>Potri.015G100900.2 pacid=42776152 polypeptide=Potri.015G100900.2.p locus=Potri.015G100900 ID=Potri.015G100900.2.v4.1 annot-version=v4.1 MDGIGNVKQEILEPSPNRQNATVSGVPDAVIELSSSSESSSGSDSESETELDGNSVVSKRQWDSNGGDGGSEMKKKKKRRRNLDDLGVVLPLGFLAPLPQ PPSSEPPTEAEMAVVESTESTMVNLIGQSSKQFWKAGDYEGAPHANWDLSSGGMDRVRVHPKFLHSNATSHKWALGAFAELMDNALDEFGNGATFVNIDM VESKKDRSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTMRLGADVIVFSRCPGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPML DFQRKGREWSRMIRYSASDWNRNVETIVCWSPFSSEADLLRQFNLMSDHGTRIIIYNLWEDDQGLLELDFDSDPHDIQLRGVNRDEKHIKMAKEFPNSRH FLTYRHSLRNYASILYLRLPSSFRIILRGKDVEHHNIVNDMMLSQEVTYRPQPGADGVPKDTNMTAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL WNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKQYWSTYCHKIGYAPRRNKKLINEFSDIETSPGYQPPTSSHSRKKYTSLGSKIS PSHSDHGYGNGHASNKVNVRTNTPTKFGKSTISPGPSPPAQDVSSEDDDCVAIPVRKANGSTQRTTPTNKSFEKDGLHATQSSSCMEDSGSQHDCMSGGG TVHTVTRSQTKVGDVDKMDCSFSESDVLALVHLKQENRELKERLEKLEGETRGEYRNGSQCEKCKSLEIQLQEAQRKLEELNKEQESLIDIFSEERVRRD QEEENLRKKLKDASNTIQELLDKVRLLEKMKSPYLKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	0	1
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	4.58	0.7727
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	4.69	0.8116
AT5G05570			transducin family protein / WD...		Potri.016G117700 [exp]	4.69	0.7804
					Potri.019G023500 [exp]	5.47	0.7703
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.011G105500 [exp]	8.36	0.7334
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	12.00	0.7321
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	18.70	0.7511
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	24.08	0.7383
AT5G61820			unknown protein		Potri.012G110600 [exp]	26.60	0.6925
AT1G35660			unknown protein		Potri.019G083100 [exp]	27.56	0.7710

Compare expression of checked genes

Potri.015G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.