Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GSA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48730 749 / 0 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 737 / 0 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G46180 97 / 1e-21 DELTA-OAT ornithine-delta-aminotransferase (.1) AT1G80600 91 / 2e-19 WIN1 HOPW1-1-interacting 1 (.1) AT4G39660 80 / 1e-15 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 74 / 6e-14 PYD4 PYRIMIDINE 4 (.1) AT2G38400 66 / 2e-11 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G22200 61 / 7e-10 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G103000 [exp] 635 / 0 AT3G48730 530 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.011G082800 [exp] 101 / 6e-23 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.017G053500 [exp] 99 / 2e-22 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 86 / 8e-18 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.016G132200 [exp] 81 / 4e-16 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.006G106800 [exp] 77 / 1e-14 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.006G020900 [exp] 76 / 3e-14 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 75 / 3e-14 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.007G085600 [exp] 73 / 1e-13 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029064 [exp] 760 / 0 AT3G48730 778 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Lus10034205 [exp] 759 / 0 AT3G48730 774 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Lus10030551 [exp] 728 / 0 AT3G48730 764 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Lus10038510 [exp] 106 / 1e-24 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10023299 [exp] 103 / 1e-23 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10008025 [exp] 86 / 2e-17 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10004480 [exp] 84 / 3e-17 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 83 / 1e-16 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10031196 [exp] 79 / 1e-15 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10025262 [exp] 78 / 4e-15 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.015G101100.1 pacid=42776085 polypeptide=Potri.015G101100.1.p locus=Potri.015G101100 ID=Potri.015G101100.1.v4.1 annot-version=v4.1 ATGGCTTCTACAATCACAGGAGTTAGTGTTGGTTTAGGACTTTCATGTTCTACAACAAGAAAGCTGACTCAGAAAAGAAATCCTTCATCATCAAGGTTGT CTTTTTGCAGCATTAAAATGGCTGTCTCTGTTGAAGAAGAGAAAAAGAAGAAGAGTTTCACTCTTGAAAAATCTGAAGAAGCTTTCAGCGCTGCTAAGGA AATGATGCCAGGAGGTGTGAATTCACCTGTACGTGCTTTTAAATCTGTTGGTGGACAACCTATTGTGTTTGATTCTGTCAAGGGTTCTCACATGAGGGAC ATTGATGGAAATGATTACATTGATTATGTTGGTTCTTGGGGGCCTGCTATAATTGGTCATGCAGATGATGAGGTACTTGCAGCCTTGTCTGAAACAATGA AGAAAGGGACCAGCTTTGGTGCCCCTTGTCTTCTAGAGAATGTTTTGGCAGAGATGGTGATCAAAGCAGTTCCAAGCATAGAAATGGTACGATTTGTTAA CTCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTGGCCCGTGCCTACACTGGACGGGAGAAGATTATCAAGTTTGAGGGCTGTTACCATGGCCATGCT GATCCATTCCTTGTCAAAGCAGGTAGTGGTGTTGCAACCCTTGGGCTCCCAGACTCGCCTGGTGTCCCCAAAGCAGCAACCTATGAAACTCTAACAGCCC CCTATAATGACATTGCTGCTGTGGAAAATCTTTTTGAGAACAACAAAGGAGAGATTTGTGGAATAATCCTTGAACCTGTTGTGGGAAATGCTGGTTTCAT CCCCCCGAAACCTGAATTTATTAATGCCATTCGCAGGATCACTGAAGAAAATAATGCTCTTCTAATATTTGATGAAGTTATGACTGGATTCCGTTTGTCA TACGGTGGAGCTCAGGAGTATTTTGGCATAACTCCTGATTTAACAACACTAGGGAAGATCATTGGTGGTGGTCTGCCAGTTGGTGCATATGGTGGGAGAA GGGAGATTATGGAGATGGTTGCACCTGCAGGGCCAATGTACCAGGCCGGAACCTTGAGTGGGAATCCCTTGGCTATGACTGCAGGGATACACACACTGAA GCGGTTGCAGAAACCAGGAAGTTACGAATACTTGGATAAGATTACCAGTGAACTTGTTCAGGGCATTATTGATGCTGGCAAGAAAACTGGGCATGCAATT TGTGGAGGCTATATACGTGGAATGTTTGGGTTTTTCTTTACGGAAGGTCCTGTTTACAACTTTGCTGATGCAAAGAAAAGTGACACAGCAAAGTTCGCCA GATTTTACCAAGGAATGCTGAGGGAGGGTGTATACTTTGCACCGTCACAATTTGAAGCTGGGTTTACAAGCTTGGCACATACTGCTGAAGATATCCAAAA GACAATAGCAGCAGCCGAAAATGTTCTCCGGCAGATTTAA
AA sequence Show only first row Show all	>Potri.015G101100.1 pacid=42776085 polypeptide=Potri.015G101100.1.p locus=Potri.015G101100 ID=Potri.015G101100.1.v4.1 annot-version=v4.1 MASTITGVSVGLGLSCSTTRKLTQKRNPSSSRLSFCSIKMAVSVEEEKKKKSFTLEKSEEAFSAAKEMMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMRD IDGNDYIDYVGSWGPAIIGHADDEVLAALSETMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA DPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDIAAVENLFENNKGEICGIILEPVVGNAGFIPPKPEFINAIRRITEENNALLIFDEVMTGFRLS YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQKPGSYEYLDKITSELVQGIIDAGKKTGHAI CGGYIRGMFGFFFTEGPVYNFADAKKSDTAKFARFYQGMLREGVYFAPSQFEAGFTSLAHTAEDIQKTIAAAENVLRQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	0	1	Pt-GSA1.1
AT5G08400			Protein of unknown function (D...		Potri.010G255300 [exp]	4.47	0.9389
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	5.91	0.9407
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	6.48	0.9476
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	6.63	0.9511	Pt-RPL21.3
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.014G171600 [exp]	7.93	0.9158	Pt-SUB1.2
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	8.00	0.9406
AT3G26710		CCB1	cofactor assembly of complex C...		Potri.001G463200 [exp]	9.79	0.9440
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Potri.009G062500 [exp]	10.81	0.9474
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	11.13	0.9460
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	13.11	0.9233

Compare expression of checked genes

Potri.015G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.