Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51140 511 / 0 Pseudouridine synthase family protein (.1.2) AT3G52260 82 / 4e-17 Pseudouridine synthase family protein (.1.2.3) AT1G76050 58 / 4e-09 Pseudouridine synthase family protein (.1.2) AT3G19440 54 / 1e-07 Pseudouridine synthase family protein (.1) AT1G78910 51 / 1e-06 Pseudouridine synthase family protein (.1) AT1G56345 46 / 2e-05 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G042000 [exp] 79 / 4e-16 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.002G016800 [exp] 64 / 4e-11 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.009G095700 [exp] 52 / 3e-07 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.013G009300 [exp] 51 / 7e-07 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 45 / 4e-05 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022437 [exp] 589 / 0 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 79 / 5e-16 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10040385 [exp] 64 / 5e-11 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10017250 [exp] 62 / 3e-10 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 54 / 2e-07 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10002811 [exp] 50 / 2e-06 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10007657 [exp] 50 / 3e-06 AT4G21770 634 / 0.0 Pseudouridine synthase family protein (.1) Lus10029848 [exp] 47 / 1e-05 AT1G56345 358 / 7e-124 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 44 / 0.0002 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 43 / 0.0003 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF00849 [poplar] [flax] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Potri.015G101300.1 pacid=42775359 polypeptide=Potri.015G101300.1.p locus=Potri.015G101300 ID=Potri.015G101300.1.v4.1 annot-version=v4.1 ATGAAGAGAAAGAGAGGAGAAAAAGAAGAAGCAGCTGAGAAGAAGATGGAAATTGTGTGGCAAACACCGGCTAATCCTCCTGAGAAACACGATTACATCT TTCGTGACGGGAGGCGCCACGTTAGACCTTACCACTTCGAGTTTATCTCCCATGTAAAAAACCGGTGGGCGGGGAAGACGATAGTGGATTTATTTGCGGA AGAATTCAAAGGCAGACCCTATGATTATTATGTTAGTGCTGTTAAATGTGGACGGATACAAGTTGATGGAGAAATGGTTCCTGTTTCGTACATTGTTAAA TCGTCGCAGAAGATCAGCCATTTCGTGCACAGGCATGAACCGCCGGTGATGGCTTGGGATGTTCCCATTCTTGATAAAGAAGATGATGTCGTAACTGTTT GGAAGCCAGCAACTGTACCTGTGCATCCTTGTGGTCAGTATCGCAAGAATACTGTTGTTGGCGTTCTCCAGGCAGAACATGGGTTAGCTCCCTTGTTTCC GGTTCATCGGCTAGATCGGCTTGTTTCAGGACTCCTTATCTTGGCTAGAAATGCTACAAGGGCTGACCTTTTTAGGCAAGAGATTGAAGCTGGCAAAGTA CAGAAACAATATGTTGCAAAGGTCATTGGGGTATTTCCTGAGGATGAGCAAATTGTTGATGTTAATGTTAATTACAATGCTCGAGAAGGAAGGAGCACTG TAGAGGTGGGTAACTCTTGTGATGGTTCTCCCATCAAGGGAAAGACTGCCTGTACAAAGTTTACAAGGATTGGCACCAATGGCATTCACAGCATTGTTTT GTGTAAACCAATCACTGGCCGAACTCATCAAATCCGTGTCCATTTGCAATACACAGGCCATCCTATAGCCAATGACATTCTTTATCTATCCGAAAATGTT ACTAATCGATCTAGTGAAGGAGTGAATGCTGATAGAGCTGCTCACAGTCCAAACAATTGTCTTGTGCCTGAAAATAACAGTTCTGATAAGTATGAAGACA GTACCGAAGAAGATTTTGACATTGATCCTATGTGCACAAACTGTCCAAATTTGGTTCCAAAAGGATATGATGGTCATGAAGAGGGTTTATGGCTGCATTG TGTGCAATATTCTGGGTCTGGATGGGTTTATCAATGTCCATATCCAGACTGGGCGGTTCCCACCTAG
AA sequence Show only first row Show all	>Potri.015G101300.1 pacid=42775359 polypeptide=Potri.015G101300.1.p locus=Potri.015G101300 ID=Potri.015G101300.1.v4.1 annot-version=v4.1 MKRKRGEKEEAAEKKMEIVWQTPANPPEKHDYIFRDGRRHVRPYHFEFISHVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDGEMVPVSYIVK SSQKISHFVHRHEPPVMAWDVPILDKEDDVVTVWKPATVPVHPCGQYRKNTVVGVLQAEHGLAPLFPVHRLDRLVSGLLILARNATRADLFRQEIEAGKV QKQYVAKVIGVFPEDEQIVDVNVNYNAREGRSTVEVGNSCDGSPIKGKTACTKFTRIGTNGIHSIVLCKPITGRTHQIRVHLQYTGHPIANDILYLSENV TNRSSEGVNADRAAHSPNNCLVPENNSSDKYEDSTEEDFDIDPMCTNCPNLVPKGYDGHEEGLWLHCVQYSGSGWVYQCPYPDWAVPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	0	1
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	1.41	0.8657
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.014G154700 [exp]	2.82	0.8394
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.007G056200 [exp]	3.00	0.8457
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	3.16	0.8369
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	3.46	0.8351
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	3.74	0.8546
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	5.47	0.8120
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	6.48	0.8289	Pt-GLUR2.1
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	7.14	0.7929
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	7.93	0.8175

Compare expression of checked genes

Potri.015G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.