Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 292 / 3e-99 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G23660 240 / 8e-79 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 238 / 9e-78 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G13170 228 / 6e-74 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50800 223 / 4e-72 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 221 / 2e-71 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 219 / 5e-71 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 145 / 2e-42 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT1G21460 138 / 2e-39 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G10850 135 / 2e-38 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101600 [exp] 424 / 2e-151 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 423 / 5e-151 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 399 / 2e-141 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 266 / 3e-89 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.003G166800 [exp] 249 / 4e-82 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 239 / 2e-78 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 213 / 1e-68 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 159 / 1e-47 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 151 / 1e-44 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032553 [exp] 304 / 1e-103 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 304 / 2e-103 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 297 / 5e-101 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10043190 [exp] 233 / 2e-76 AT5G13170 204 / 5e-65 senescence-associated gene 29 (.1) Lus10023249 [exp] 228 / 2e-74 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 228 / 6e-74 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 228 / 8e-74 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10008861 [exp] 226 / 9e-74 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 227 / 1e-73 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 224 / 4e-72 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.015G101500.2 pacid=42775565 polypeptide=Potri.015G101500.2.p locus=Potri.015G101500 ID=Potri.015G101500.2.v4.1 annot-version=v4.1 ATGGCTTTGCATTTGACATGGATGTTAGCTTTCGGTCTTTTAGGCAACCTCATCTCCTGTCTGGTCTGTCTTGCTCCTCTGCCAACATTTTATCAAATTT ACAAGAAGAAAACAAGCGAAGGGTTTCAATCTATTCCATATGTGATTGCACTATTCAGCGCAATGCTTTGGCTGTTCTATGCAATTTTTAGTGAGGATGC CATCCTTCTCATCACCATCAATACGTTTGCCTTTTTCATGGAGTTCGGCTATATTACTGTCTACCTTCTCTATGCCACCAAGAAGGACAAAATTCTCACC TTCAAACTTCTCCTCCTGTTCAATAGTTTTGGGTTCGGTCTCATATGTGTACTAACTCTATTCCTGACACAAGGCCAAAAACGTGTCCAAGTTCTTGGAT GGATATGCATGATATTTTCTCTTTGCGTGTTTGTTGCCCCTCTTTTCATTGTGAGAGAAGTTATAAAAACAAAGAGCGTGGAGTTCATGCCTTTTTCCTT GTCTTTCTTCCTCACTTTGAGTGCAGTCATGTGGTTCTTCTATGGTTATCTAAAGAAAGACCAGTTTGTTGCTGTTCCAAACATATTGGGGTTTTTATTT GGTATCATCCAGATGGTCCTATACGTAATCTATAGGAACCCCATGAAAATTTTGGTGGTGGAGCCTAAACTTCAGGAGTTATCTCATGAACACATTGTAG ACATTAGAAAGTTGGGCACAGCAATCTGCTCTGAGATAAACATTGTGATACCACAGCTGAATGATAGCGGGAAAGTTGTATTTGAAGATCAAATTGCCAA GGAACTAACCAAGCAAACTCAGGAAATCACGAATGCCACCAACAAGATTTAA
AA sequence Show only first row Show all	>Potri.015G101500.2 pacid=42775565 polypeptide=Potri.015G101500.2.p locus=Potri.015G101500 ID=Potri.015G101500.2.v4.1 annot-version=v4.1 MALHLTWMLAFGLLGNLISCLVCLAPLPTFYQIYKKKTSEGFQSIPYVIALFSAMLWLFYAIFSEDAILLITINTFAFFMEFGYITVYLLYATKKDKILT FKLLLLFNSFGFGLICVLTLFLTQGQKRVQVLGWICMIFSLCVFVAPLFIVREVIKTKSVEFMPFSLSFFLTLSAVMWFFYGYLKKDQFVAVPNILGFLF GIIQMVLYVIYRNPMKILVVEPKLQELSHEHIVDIRKLGTAICSEINIVIPQLNDSGKVVFEDQIAKELTKQTQEITNATNKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101500 [exp]	0	1
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	5.19	0.9268
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	8.83	0.9152
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	10.81	0.9134
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	12.16	0.9099
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	12.48	0.9041
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.005G079000 [exp]	12.64	0.8995
					Potri.018G104500 [exp]	13.41	0.9049
AT5G20480		EFR	EF-TU receptor (.1)		Potri.004G098501 [exp]	14.96	0.8846
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	15.16	0.8959
AT5G54860			Major facilitator superfamily ...		Potri.011G137400 [exp]	19.36	0.8553

Compare expression of checked genes

Potri.015G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.