Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 466 / 1e-162 DHHC-type zinc finger family protein (.1) AT3G48760 461 / 4e-160 DHHC-type zinc finger family protein (.1) AT5G41060 419 / 1e-144 DHHC-type zinc finger family protein (.1.2) AT4G24630 340 / 2e-113 DHHC-type zinc finger family protein (.1) AT5G50020 329 / 1e-108 DHHC-type zinc finger family protein (.1.2) AT3G56930 323 / 7e-106 DHHC-type zinc finger family protein (.1.2) AT5G05070 292 / 8e-95 DHHC-type zinc finger family protein (.1) AT2G40990 273 / 2e-87 DHHC-type zinc finger family protein (.1) AT3G56920 261 / 1e-83 DHHC-type zinc finger family protein (.1) AT3G51390 85 / 6e-18 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G103300 [exp] 691 / 0 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 491 / 3e-172 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 480 / 4e-168 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 367 / 7e-124 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 358 / 2e-120 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 348 / 1e-116 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 342 / 6e-114 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 322 / 3e-105 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 311 / 4e-101 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 481 / 2e-168 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 478 / 4e-167 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 469 / 4e-163 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 464 / 4e-161 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 336 / 2e-111 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 328 / 8e-108 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 306 / 9e-100 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10033527 [exp] 297 / 1e-97 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10027274 [exp] 293 / 5e-95 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 292 / 9e-95 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.015G101900.1 pacid=42776062 polypeptide=Potri.015G101900.1.p locus=Potri.015G101900 ID=Potri.015G101900.1.v4.1 annot-version=v4.1 ATGAGAGACATGTATGTGGTCCCACCTCCTCCGGATCCGGCTGGCGGAGTTACGGTAGACTCCGCTATTGATGGTGACGATGGGGAGGGTCTAATGACTT ACCAGGCATGGAAAGGCAGTAATACATTTTTGCTTCAGGGGAGGCTTATATTTGGACCGGATGCAAGATCTATTCTGTTAACCATCTTTCTTATTGTGGT TCCAGCTGTTGTTTTCTGTGTCTTCGTAGCAAGAAAGCTGATAGATGATTTTTCTCATCACCTGGGAATATCAATAGTAGTCTTTGTCGTTGTTCTGACA ATACTAGATTTAACCTTTCTTCTGCTAACATCAGGAAGAGATCCTGGTATAATACCTCGTAATGCTCATCCTCCAGAGCCGGAAGGTTATGAAGGGAACA CTCCACTTACTCCTGGCCAAACCCCACCTTTCCGTTTGCCACGCACAAAGGATGTTATCATCAATGGGATAACTGTGAAGACCAAGTACTGTGATACCTG CATGCTTTATAGGCCCCCACGATGTTCTCACTGTTCCATATGCAACAACTGTGTGGAAAGATTTGACCATCATTGCCCTTGGGTTGGTCAGTGTATTGGA TTGCGGAACTACCGGTTCTTCTTCATGTTTGTCTTTACTTCAACAATTATTTGCTTATATGTACACGCATTTTGCTGGGTCTACATTAAGAGGATCATGA ATAGCGAGGAGACGTCAATTTGGAAAGCAATGTCCAAGACTCCTGCCTCTATTGCTCTAGTGATTTACACCTTTATTTCAGTTTGGTTTGTTGGTGGTCT TACCTTGTTCCATTCATATCTCATCAGTAAAAATCAATCTACTTATGAGAATTTTAGATACCGGTATGATGGGCTAGCTAACCCATTTGACAGAGGATTG ATTGAGAACTTCAAGGAGATATTTTGCTCTAGCATCCCTCCATCTAAGAACAGTTTCAGGGCAAAAGTACCAAAGGAACCTGCCATTCCACCTAGAATGG TAGCTAGTAGTTTTGTCAGTTCAAGCGTGGAAAAATCTGCCGGTGACATAGAAATGGGGAGGAAGCCAGTGTGGGACGAGGCTTCAGGAGATGATGATTA TAATGGCACAGCAAGAAATGATGACAGTCTGCATGAGGATCGTGGATTGCCTGATGTCTCTCCAGATTTAAGCAGGATCCTCCCCCCTCAGGGTATGGAA GGGCGCAGCGTCATGCATTCCAGACGATCAAGTTTGGGTAGAAAAAGTGGCAGCTGGGATATATCACCTGATGTTCTTGCTTTAGCAGCTGGAACAGGGG AATCAAAGCGGATGGCTAGTGGCAGTGGTGACAACTTGACATCAGATGCCCAACAGTCTAAGAGGCATACTAGGTTGTAA
AA sequence Show only first row Show all	>Potri.015G101900.1 pacid=42776062 polypeptide=Potri.015G101900.1.p locus=Potri.015G101900 ID=Potri.015G101900.1.v4.1 annot-version=v4.1 MRDMYVVPPPPDPAGGVTVDSAIDGDDGEGLMTYQAWKGSNTFLLQGRLIFGPDARSILLTIFLIVVPAVVFCVFVARKLIDDFSHHLGISIVVFVVVLT ILDLTFLLLTSGRDPGIIPRNAHPPEPEGYEGNTPLTPGQTPPFRLPRTKDVIINGITVKTKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIG LRNYRFFFMFVFTSTIICLYVHAFCWVYIKRIMNSEETSIWKAMSKTPASIALVIYTFISVWFVGGLTLFHSYLISKNQSTYENFRYRYDGLANPFDRGL IENFKEIFCSSIPPSKNSFRAKVPKEPAIPPRMVASSFVSSSVEKSAGDIEMGRKPVWDEASGDDDYNGTARNDDSLHEDRGLPDVSPDLSRILPPQGME GRSVMHSRRSSLGRKSGSWDISPDVLALAAGTGESKRMASGSGDNLTSDAQQSKRHTRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	0	1
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	2.23	0.6662
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.005G035800 [exp]	4.69	0.7085	HAP5.6
AT1G12380			unknown protein		Potri.012G129100 [exp]	8.83	0.6804
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.018G062350 [exp]	15.68	0.6856
AT5G58530			Glutaredoxin family protein (....		Potri.008G072200 [exp]	16.43	0.6385
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.002G043500 [exp]	18.49	0.6574	Pt-WRKY21.2
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	21.16	0.6107	Pt-SMT1.1
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	21.35	0.6601
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	22.62	0.6365
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G106800 [exp]	24.67	0.6279

Compare expression of checked genes

Potri.015G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.