Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 1833 / 0 DNA binding;ATP binding (.1) AT3G28020 175 / 6e-49 unknown protein AT4G13750 146 / 1e-34 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G102700 [exp] 3328 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.015G103100 [exp] 3137 / 0 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1) Potri.012G103700 [exp] 2907 / 0 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1) Potri.015G103000 [exp] 2420 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102401 [exp] 924 / 0 AT3G48770 771 / 0.0 DNA binding;ATP binding (.1) Potri.015G102301 [exp] 686 / 0 AT3G48770 389 / 1e-120 DNA binding;ATP binding (.1) Potri.001G317200 [exp] 163 / 7e-40 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G102501 [exp] 79 / 2e-17 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004567 [exp] 1954 / 0 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1) Lus10032551 [exp] 164 / 1e-43 AT3G48770 145 / 9e-38 DNA binding;ATP binding (.1) Lus10016661 [exp] 155 / 2e-37 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G102200.1 pacid=42775451 polypeptide=Potri.015G102200.1.p locus=Potri.015G102200 ID=Potri.015G102200.1.v4.1 annot-version=v4.1 ATGGCAACTCCAAAACAACACATAGAACACATAAGAAAAACTACATTCTCAATAGGAGGAGAAAAGAACCCTTTGGCTCCTATGCTTGATCAGGCTGTCA AGTATCTTTCTGCTGAACTCTACGCTAAAGATGTCCACTTTCTTATGGAACTCATTCAGAATGCTGAAGATAATGAATACTTGGAAAGGGTGGATCCTTC ACTTGAGTTTGTCATAACATCTCGAGATATAACAAACACTGGTGCGCCTGCTACTTTGCTCATCTTCAATAATGAGAAGGGTTTTTCTGCCAAAAATATC GAGTCCATTTGCAATGTTGGAAATTCCACTAAGAAAGGGAACCGGAAGCGTGGCTATATTGGGGAGAAAGGAATTGGATTCAAGAGTGTGTTTCTTATTG CTGCTCAGCCTTACATATTCAGCAATGGCTATCAGATACGATTCAATGAAAAGCCCTGTCCACACTGCAATCTTGGATACATAGTTCCTGAATGGGTTGA TGATAGCCCATCTCTTTCTGACATAAAACAGATTTATGGTTCCGCTTCTACCCTCCCAACTACTACACTGATTTTGCCTCTGAAGCCTGATAAGGTGAAC CCCGTGAAGCAGCAGCTGTCGAGTATTCATCCTGAAATCCTGCTGTTCCTTTCAAAGATAAAACGTCTTTCTGTCAGGGAAGAAAATGAGGATCCCAGGC TCAACACTGTTAGTGCAGTAGCTATTACCAAAGAGACAAATTTCATGCAAAGGAAAAACATTGATGCCGAGTCCTACACCCTCCATCTGTCTGCAGATGA AAACAGTGATGAATTTGAAAAGGAATGCAGCTACTACTTGTGGAAACAGAAATTTCCTGTCAGGCAGGAAAACAGAGTCGACATGAGAATGGAAGTGGAG GATTTGGTGATCACTTTGGCTTTTCCTAATGGAGAGCGCCTCCATAGGGGAATGAAGTACTCCCCTGGAATATATGCATTTCTTCCAACGGAGATGGTGA CCGACTTTCCCTTCATAATTCAAGCAGATTTTATTCTAGCATCATCAAGGGAAACAATACGATGGGACAACATATGGAACCAGGGAATTCTTGATTGTGT TCCCTTTGCTTTTATCGAAGCATTTGTCTCATTAGTCAAAACAGTGCATGGTGCACCAGCATCTAGTTTGCCTCGAATGTTCAAGTTCTTGCCGGTCCAT AGCCCCCCCTTTGAAAAGTTGAATTCAGTGAGGGAATCAATTAAAGCGAAGCTGGCTGAAAAGGATATCATTCCAAGTGAGTCATACACAGCACAACAGT TCTTTCATAAACCACGTGAAGTTGGCCGATTAATGCCTGCTTTCTGGAATATACTGAAGAAGACAAGGGAGCGAGGAGTGAGCTTGCACAAACTTTCATC CCATGGTTGCTATGTTCTGAATTCTTCATTTGATAAGCCAGAGTATGATGACATACTGGATTTCTTGGGGGTGAGACCGGTAAGCAGTGAGTGGTATGTA AAGTGCATTCAAGGCTCTAATATTGTAATGGGAGTCTCAGAGGAAACGTACCTGGAGCTTCTTCATTTCCTTGCTGTTAATTGGCAGTCCGAGTTTCACA GCACAGGCATGGGGAACATTCCACTAATTAAATATGTGGGTACTGATGGGAGCGTGTCTTTGTGCTCTGTTAATGAATCTGCTCAACTGTATGGTAAAAC TCTGTGCCTATCACTTCAATCTTCTCGTGTCTCATGGTTGATTGATTGGAACAGAGAGTTCCGATGCATGGCAAATCATTTTTTTGTGCCAAGAACCACA CAAGAAGCTATCTGTTCATCATCTAACAAAGAACTTGTGTTAAAATGGCTTGTAGACCTGGTTAAAATCAAAGCTTTAAGCGTATATCATTACGCAGATC TCTACGGAGATCAAGTCAGTTGCGACCGGAAACTTGTCATTGCCTATGCTCACTTCTTACATCACTCATTCTTAAATGACTATCTATCGGAAAGGGAAGT TGTTTCTTTGTGTGGTAAGATGCCACTTGTTGATAGCTATGGCCATGTGATCAAAGCAAGGAATGCGGTTCTCGTCCCAGCTAATGAAAGCAAATGGGTG CAATTGATTGGTTCTAATCCTTGGAGCGAAGAAAGCTATGTTGAGTTAGGAGAAGACTACTTGCATCCTGCATGTTTTGCTGGCACAAGCACGGTGGGAA ACCAACTCATGAATTTCCTTAAAGTTTATGTTAAGGCTTCTGATATTCCTCACATATCTCCCCCCAATGCTGGAATACCTACTGCGTCAACACCACTTAC CAAACAAAATGCATTTCTGCTGTTGGATTGGATTCGTGAGCTGAAACGGTGTGGAATTCACATTCCAGCAAGGTTCATGGCTTGCATACAGGAGGGTAGC TGGCTGAAAATTACTATGAATGGCTCTCCTGGTTACAAACCACCATCACAGTCATTCCTACTTGCTTCGAGCAACAGAAGCTCAAAGTGGGGAAACATTT TGCAGAGTGCATCTGTGCTTGTCGATATTCCTTTGATAGATCAGGGTTTTTATGGTCATAAAATTACGGAGTATAGAGAGGAGCTACGGACAGTTGGGGT CATGTTTGAGTATGGAGAGGCATGCAAATTTATTGGGAACCATCTCATGTCTTTGGCAGCTTCATCCGCTTTAACTAAAAGCAATGTTATCTCCATACTG AATTTCATCAGATTTTTGAGGCAGAATTTTCTTTCTCTAGATGAATTCATTGGCAGAATTAAAGAAGAAAGGTGGCTAAGGACTTGTTGGGGTGATAGGT CTCCGGTTGGATCTGTTCTATATGATCAGGAGTGGACAACTGCGAGGCAAATTAGTGACATCCCTTTCATTGATGAAGATTACTATGGCGAGGACATCCT TTTTTTCAAACCAGAACTCCAGTTGCTTGGCGTTGTAGTTGGCTTCAATGAAAGTTATCAATTGGTTGTTGATTGCTTTAAATCGCCTTCATGCTTATCT ACTCTGACAAAGGAGGCCTTTCTTCTGGTTTTGGATTGCATGCATCATTCTAATTCTGCTCACAAACTAGTTAATGCAGTGAAAAGTACAAAATGCTTAA AGACAAACTTAGGTTACAAATGTCCTGGCGATTGTTTCTTGTTTAATCCTGAATGGGGTTGTCTTCTAAAGGTCTTTGGTGGTTTCCCATTGGTTGATAG TAATTTCTATGGAAGCAGCATCATCTCTCACAATACGGAGTTGAAGGAGCTGGGAGTAAAGGTAGACTTTGAGGATGCTGTCAGAGTGTTTGTTCACACT TTTATAAAGCAGGCATCTTCGTCTTCCATTACAAAGGACAATGTGTTTTCATTCATATCATGCTACAGAAAACTGAAGGGAACTCCAAACAAATTTCCTT CAGATCTTAAGAAGTGCATCCGCGAGGTGAAATGGCTGCGGACTCGGCTTGGTGATTATAGATCTCCAAGAGAATGTATTCTGTTCGGTCCTGTGTGGGA GTTAATTTATCCAATTACTCGCCTTCCGTTTATCGATGACAGCGACAAATACTATGGGAATGGCATTCATGAGTATCGAAACGAGCTGAAGAGTATGGGG GTCGTTGTTGAATTTAAAACCGGTGTGAAGTTTGTGGCTGCTGGTCTTTGCTTTCCTCAAAATCCACGTTGCATAGCTCCCGGGAATGTGCTTTCATTAC TGGAATGCATCCGTGCTTTACTGCAAGAAAACGATTACTCCTTTCCCGATGCTTTTCTGAAAAATATTTCTCGAGGATGGTTAAAGACCCATGCTGGTTT CAGGTCTCCGGGTAACTGCTGTTTGTTCAATTCCCGGTGGAGTTCCCACGTGAGGCCTACTGATGGACCATTCATTGATGAAGATTTTTATGGTTCTGAC ATCAAATTGTATTCAAAAGAGCTCAGTGCAATAGGAGTTGATGAAGAAAAGGTTTGCTCATTGCTTGCCAGTCATCTTGATTCCCATTCTGAATTCGACA CTATAGTTCGAGTATATGATTTTCTGAGAGAAAATAAGTGGAAACCAGATAGTGATGCTACCAGAAAGATTTGGATTCCAGATGGACTTGAGAATGGAAT GTGGGTTGACCCAGAAGAATGTGCTCTGCATGACAAAAATGGTCTCTTTGGTCTGCAGCTGAATGTATTGGAGAATCATTATAAGCCAAAATTACTTCAT TTCTTCTCCAGTTCATTTAATGTTAAATCCAATCCTTCATTTGATGATTACTGTAAGCTTTGGAAGGTTTGGGAAAGTTTAGGAAGACCATTGACACATG CTGAGTGCTGTGCTTTTTGGGAGTGTGTTATGATGCAAAGGAGCTCAAGGACAGAGAGAACCCTTGCTGATGATTTGGTAAAGCTACCTGTTGTTTTGCG CTCTGGTGAAATTTTGTTGTCCAGCAAGAGTGATGTTTTTATTGCTGATGACCTTCTACTAAAGGACCTATTTGAGAAGTTCTCATCGCGCCCGATATTT GTCTGGTGTCCTCAGCCAAACTTGCCTTCTTTGCCTCGAACTAGGTTGCTTGAAGTCTACAGGAAAATTGGGGTTCGCACTGTATCTGAATCAGTGCTGA AGGAAGAATTGTCATTGGCAGATGGAGTAGAACTTAGTCAGATGGATTCGAGGGATGCTGGGATTGGAAAGGAGCTGATTAGACTGATTCTTGGCTTTCT AGCAGATCCTTCTCTTGATATGGAAGCAACAAAGAGGCATGGAGCTGTCCAGTGCCTCCTGAATCTTAAGGTGCTGGAGACTATGGAGCCAATTACTGTA AGCTATAGTTTATTGCTTTCTGACGGGGAACCTCTGAAGGTGAAAGCAAGCCGTATGATTCGCTGGGATAAAGAGTGTTCAAAGTTTTTCACACAGAAGA TGGATAAAGCTGGTGGCCGGAAAAATCTTATTGAATATGCAACCTCTTTTTCTGAAGAAATAGCTCGGGGGGTGTTGTGGGATAAAGAAGATCAAATAAA AGCACTCTCTGAACTGATCAAGTTGGCTTTCCTCCTGAATTTTGATGAACAAGCTGTTCAATTCTTGATGAAATCTAATAATCTTCAAACTTTTCTGGAG GACGAGGAGTTCCTTAATGCTGCCTTCCCTTCTGTTTAG
AA sequence Show only first row Show all	>Potri.015G102200.1 pacid=42775451 polypeptide=Potri.015G102200.1.p locus=Potri.015G102200 ID=Potri.015G102200.1.v4.1 annot-version=v4.1 MATPKQHIEHIRKTTFSIGGEKNPLAPMLDQAVKYLSAELYAKDVHFLMELIQNAEDNEYLERVDPSLEFVITSRDITNTGAPATLLIFNNEKGFSAKNI ESICNVGNSTKKGNRKRGYIGEKGIGFKSVFLIAAQPYIFSNGYQIRFNEKPCPHCNLGYIVPEWVDDSPSLSDIKQIYGSASTLPTTTLILPLKPDKVN PVKQQLSSIHPEILLFLSKIKRLSVREENEDPRLNTVSAVAITKETNFMQRKNIDAESYTLHLSADENSDEFEKECSYYLWKQKFPVRQENRVDMRMEVE DLVITLAFPNGERLHRGMKYSPGIYAFLPTEMVTDFPFIIQADFILASSRETIRWDNIWNQGILDCVPFAFIEAFVSLVKTVHGAPASSLPRMFKFLPVH SPPFEKLNSVRESIKAKLAEKDIIPSESYTAQQFFHKPREVGRLMPAFWNILKKTRERGVSLHKLSSHGCYVLNSSFDKPEYDDILDFLGVRPVSSEWYV KCIQGSNIVMGVSEETYLELLHFLAVNWQSEFHSTGMGNIPLIKYVGTDGSVSLCSVNESAQLYGKTLCLSLQSSRVSWLIDWNREFRCMANHFFVPRTT QEAICSSSNKELVLKWLVDLVKIKALSVYHYADLYGDQVSCDRKLVIAYAHFLHHSFLNDYLSEREVVSLCGKMPLVDSYGHVIKARNAVLVPANESKWV QLIGSNPWSEESYVELGEDYLHPACFAGTSTVGNQLMNFLKVYVKASDIPHISPPNAGIPTASTPLTKQNAFLLLDWIRELKRCGIHIPARFMACIQEGS WLKITMNGSPGYKPPSQSFLLASSNRSSKWGNILQSASVLVDIPLIDQGFYGHKITEYREELRTVGVMFEYGEACKFIGNHLMSLAASSALTKSNVISIL NFIRFLRQNFLSLDEFIGRIKEERWLRTCWGDRSPVGSVLYDQEWTTARQISDIPFIDEDYYGEDILFFKPELQLLGVVVGFNESYQLVVDCFKSPSCLS TLTKEAFLLVLDCMHHSNSAHKLVNAVKSTKCLKTNLGYKCPGDCFLFNPEWGCLLKVFGGFPLVDSNFYGSSIISHNTELKELGVKVDFEDAVRVFVHT FIKQASSSSITKDNVFSFISCYRKLKGTPNKFPSDLKKCIREVKWLRTRLGDYRSPRECILFGPVWELIYPITRLPFIDDSDKYYGNGIHEYRNELKSMG VVVEFKTGVKFVAAGLCFPQNPRCIAPGNVLSLLECIRALLQENDYSFPDAFLKNISRGWLKTHAGFRSPGNCCLFNSRWSSHVRPTDGPFIDEDFYGSD IKLYSKELSAIGVDEEKVCSLLASHLDSHSEFDTIVRVYDFLRENKWKPDSDATRKIWIPDGLENGMWVDPEECALHDKNGLFGLQLNVLENHYKPKLLH FFSSSFNVKSNPSFDDYCKLWKVWESLGRPLTHAECCAFWECVMMQRSSRTERTLADDLVKLPVVLRSGEILLSSKSDVFIADDLLLKDLFEKFSSRPIF VWCPQPNLPSLPRTRLLEVYRKIGVRTVSESVLKEELSLADGVELSQMDSRDAGIGKELIRLILGFLADPSLDMEATKRHGAVQCLLNLKVLETMEPITV SYSLLLSDGEPLKVKASRMIRWDKECSKFFTQKMDKAGGRKNLIEYATSFSEEIARGVLWDKEDQIKALSELIKLAFLLNFDEQAVQFLMKSNNLQTFLE DEEFLNAAFPSV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	0	1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	1.00	0.9671
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	1.41	0.9546
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	1.73	0.9348
AT1G53163			unknown protein		Potri.011G116600 [exp]	2.82	0.9251
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116210 [exp]	3.46	0.9048
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103000 [exp]	3.74	0.9043
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	4.47	0.8863
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	4.47	0.9125	Pt-RCOMT1.3
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.002G101900 [exp]	5.29	0.8752
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	7.74	0.8977

Compare expression of checked genes

Potri.015G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.