Plant FIBer expression Database

Potri.015G102301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48770 387 / 6e-120 DNA binding;ATP binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G103000
[exp]
948 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1)
Potri.015G103100
[exp]
785 / 0 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1)
Potri.012G103700
[exp]
669 / 0 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1)
Potri.015G102200
[exp]
654 / 0 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1)
Potri.015G102700
[exp]
648 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004567
[exp]
505 / 2e-163 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1)
Lus10032551
[exp]
122 / 2e-30 AT3G48770 145 / 9e-38 DNA binding;ATP binding (.1)
PFAM info
Representative CDS sequence
>Potri.015G102301.1 pacid=42775566 polypeptide=Potri.015G102301.1.p locus=Potri.015G102301 ID=Potri.015G102301.1.v4.1 annot-version=v4.1
ATGGGAGTTGTTGTTGAATTTAAAGCTGGTGTGAAATTTGTAGCTGCGGGTCTTTATTTTCCTCTGAATCCTTGTCACATAACTTCTGAGAATGTGTTCT
CTTTGCTGGAGTGCATCCGAATCTTATTGAAAGAGAAGGATTACTCCTTTCCTGACACTTTTCTAAAAAATGTTCGTCGAGAGTGGTTAAAAACCCATGT
TGGCTACAGGACTCCAGACAACTGTTGCTTGTTTGATTCCAAATGGGGTTTGTATTTGAAGAGCACTGACGGACCTTTCATTGATGAAGTGTTTTATGGA
TCTAACATCACATCATATAGGGAAGAGCTGAGCTCTATAGGAGTTACTGTTGAAGTGGAAGAGGCATGCCCATTGCTAGCCAGTAACTTATATCACCATT
CTGATTTTTCCACTATTGTTCGAATATTCAAATTTTTGAGCAGAAATGAGTGGATGCCAGAAAGTGATGCAACCAGAAAGATTTGGATTCCTGATGGACA
CGAGAACGGTAAGTGGGTTAATCCAGAAGAATGTGTCCTGCGCAACAGAGATGGTCTTTTTGGTCAGCAGTTTAATTTTTTGGAGGAATACTATGAGCCG
GACTTGCTTTGTTTCTTCTCCACTGCATTTAATGTCACTTCTTATCCTTCTTTTGATTCTCACTGCAAGCTTTGGGAGGTTTGGGAAACTTCAGGATACC
AATTATCACATGCTCAGTGTTGTGCATTCTGGGAGTGTGTTATGAGTCAATGGAGCTCAGAGGTTGAGACAACTCTTGCTGATGGCTTAATGAAACTGCC
TGTTCATTCTGGCTTTGGAGAAATTTTGTTGTTAGACAAGAATGATGTTTTTGTAGCTGATGACCTTCTTCTGAAGGAACTTTTTGAAAAGCTTTCTCCT
CGCCCAGTACTTGTCTGGTATCCTCAGCCGAGCTTGCCTTCTTTGCCCCGAAGTAAGTTGCTTGAAATATACAGGAAAATCGGAGTTCGCACAATTTCTG
AATCTGCACGGAAGGAAGAACTGTCCTTGGCACATGGGGTGAAACTCAAACCGTTGAATCCAAGAGTCCTTTTTATAGGAAAAGAGATGGTTCGCCTCAT
TCTTGGCTTTTTAGCTGATCCTTCTTTAAAAATGCAAGTGAAAAAGAGGCATGAAGCTGTTCAGTGCCTCCTCAACATCACTGCCCTTGTGACTGCGGAG
CCACATACTGTAAGCTATAGTCTATCACTCTCTTCAGGGGAGATTGTGAAAGTAAGAGCAAGTCGAATGATTCGTTGGGATAGAAAGAGTTCAAAGATTT
ATACACAGAAGCCAGACAAGGCTGGTGGACCCAAAGTTCGCATTGAATATGCCACTTATTTAGCTGAAGCCATAGCTGAGGGCGTGTTGTGGGATAAAGA
AGATCATATAAGCGCACTCTCTGAGCTGATCAAGTTGGCTGTCCTGGTCAGTTTCAATGAAGAAGCAGTTCAGTTCTTAATGAAGTCCAAGAATTTGCAG
AGTTTTGGGGAGGATGAGGACTTCCTGTCTGCTGCTTTCCCTTAG
AA sequence
>Potri.015G102301.1 pacid=42775566 polypeptide=Potri.015G102301.1.p locus=Potri.015G102301 ID=Potri.015G102301.1.v4.1 annot-version=v4.1
MGVVVEFKAGVKFVAAGLYFPLNPCHITSENVFSLLECIRILLKEKDYSFPDTFLKNVRREWLKTHVGYRTPDNCCLFDSKWGLYLKSTDGPFIDEVFYG
SNITSYREELSSIGVTVEVEEACPLLASNLYHHSDFSTIVRIFKFLSRNEWMPESDATRKIWIPDGHENGKWVNPEECVLRNRDGLFGQQFNFLEEYYEP
DLLCFFSTAFNVTSYPSFDSHCKLWEVWETSGYQLSHAQCCAFWECVMSQWSSEVETTLADGLMKLPVHSGFGEILLLDKNDVFVADDLLLKELFEKLSP
RPVLVWYPQPSLPSLPRSKLLEIYRKIGVRTISESARKEELSLAHGVKLKPLNPRVLFIGKEMVRLILGFLADPSLKMQVKKRHEAVQCLLNITALVTAE
PHTVSYSLSLSSGEIVKVRASRMIRWDRKSSKIYTQKPDKAGGPKVRIEYATYLAEAIAEGVLWDKEDHISALSELIKLAVLVSFNEEAVQFLMKSKNLQ
SFGEDEDFLSAAFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48770 DNA binding;ATP binding (.1) Potri.015G102301
[exp]
0 1
AT4G39010 ATGH9B18 glycosyl hydrolase 9B18 (.1) Potri.004G162200
[exp]
5.29 0.9738
Potri.002G192050
[exp]
12.88 0.9871
Potri.016G068066
[exp]
18.65 0.9822
AT1G66870 Carbohydrate-binding X8 domain... Potri.014G114500
[exp]
18.89 0.9538
Potri.015G120700
[exp]
20.00 0.9804
AT2G36985 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL f... Potri.006G125600
[exp]
20.19 0.9458 Pt-ROT4.1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.005G035700
[exp]
20.63 0.9410
AT3G15540 AUX_IAA MSG2, IAA19 MASSUGU 2, indole-3-acetic aci... Potri.003G056900
[exp]
21.07 0.9373 AUX22.3
Potri.001G387900
[exp]
21.49 0.9699
AT4G13440 Calcium-binding EF-hand family... Potri.019G029100
[exp]
21.90 0.9324

Potri.015G102301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.