Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 773 / 0 DNA binding;ATP binding (.1) AT3G28020 153 / 2e-42 unknown protein AT4G13750 121 / 3e-28 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103000 [exp] 1188 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102700 [exp] 922 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.015G102200 [exp] 917 / 0 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1) Potri.015G103100 [exp] 915 / 0 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1) Potri.012G103700 [exp] 908 / 0 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1) Potri.001G317200 [exp] 155 / 3e-39 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G102501 [exp] 81 / 3e-18 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1) Potri.005G093000 [exp] 43 / 0.0008 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004567 [exp] 789 / 0 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1) Lus10016661 [exp] 141 / 2e-34 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G102401.1 pacid=42775492 polypeptide=Potri.015G102401.1.p locus=Potri.015G102401 ID=Potri.015G102401.1.v4.1 annot-version=v4.1 ATGGCGAGTCCGAGAGAACACATAGAGCACATTAGAAAAACAACATTCTCAATAGGAGGAGAAAAGAACCCTTTGGCTCCTATGCTTGATCAGGCTGTCA AGTATCTCTCTGCCGAGCTCTACACTAAAGATGTCCACTTTCTCATGGAGCTCATTCAGAATGCGGAGGACAATGATTACTTGGAAGGTGTAGATTACTT GGAAGGTGTAGACCCTTCGCTCGAGTTCGTCATAACATCTCGTGATATAACAGCCACCGGTGCACCAGCCACTTTGCTGATCTTCAATAGCGAGAAGGGT TTTTCTGCTAAAAACATAGAGTCGATTTGCAGTGTCGGGAATTCCACTAAGAAAGGCAACAGGAAACGTGGTTATATTGGGGAGAAAGGAATTGGGTTCA AGAGTGTGTTTCTGATCACTCCCCAGCCTTTCATATTCAGCAACGGCTATCAGATACGCTTCAATGAAAAGCCTTGCCCCCACTGCAATCTTGGATACGT TGTTCCTGAATGGGTTGAGGAGAATCCATCTCTTTCTGACATTAAACAAATATACGGTTCCAATTCAACTCTTCCGACAACAACAATAGTCTTGCCCCTG AAACCTAACAAGGTGAAGCCTGTGAAGCAGCAGCTGTCCAGCATTCATCCTGAAGTGCTTTTATTTCTTTCGAAGATTAAAAGCCTTTCTGTCAGGGAAC AGAACGAGGATCCCAGGCTCAATACAGTGAGTGCAATAGCTATTACAAAAAGAACTAATTTCAGGGCTAGGGAGAGCATGGATGCCGAGTCCTACACACT CCATCTGTCTGCGGAGGAAAACAATACTGATGAGCAAGACAGAGAATGCAGCTATTCTGTGTGGAAACAGAAGTTTCCAGTGAAAAAAAAAAACAAAATC GAGAAGAGAATGGGAGTGAAAGATTGGGTAATCACTCTGGCTTTTCCTAATGGAAAGCGTCTCCGTCGAGGAAGGAGCTTGCCTGGAATCTATGCATTTC TTCCTACGGAGATGGTCACAAATTTGCCCTTCATAATTCAAGCAGATTTTATTCTGGCATCATCTAGGGAAACAATACTTTTGGATGACAATTGGAATCA AGGAATTCTTGATTGCGTTCCGCTTGCTTTTATTAATGCATTAGTCTCGTTAGTCAAAATGAGAGAAGATGCACCGGTGTCTAGTCTGCCTCGCTTGTTC CAGTTCTTGCCAATCAAGAGTTCTCACTATCCAACACTTAATGCTGTGAGTGAATCAATCAAAGTAAAGCTGGCTGAAGAAGAAATTGTTCCAAGTGAGC CTTTCACAGACCAGAAGTTCTTCCACAAACCATCAGAAATTGGTCGAATAATGCCTGCATTCTGGAGTGTGTTGAACAAGGCAAGGAAGGAAGGGGTGAG ATTTGATAATCCTTCATCCCATGGCTGGCATGTTCTGAGCTCTCACTTTGATAAACCTGAGTATGATCATATACTTGATTTCTTGGGTGTGGGACATGTG AACAATGAATGGTATGCAAGGTGCATTCGGAGTTCTAATCTCTTAATGGGAGTCTCAGAAGATGTTTATCTGCAAATTCTTCTTTTTGTGGCCAATAATT GGCGTACGAAGTTTTGCACCACCACGATGGGCGACATTCCACTCATAAAATATGTAGATCGTGATGGTAGTGTGTCTTTGTGCAGCATCAACGAATCAGC TCAGAAGAACAGTGGGAGGTTGTTGTGTCGATCACATGAAACTCATTATACATCTTGGTTGATTGATTGGAACAAGGAATTTGGATTTGTTGGAAATAGA TTTTTCCTGCCGAAAAGTACACAGGAAGCCATCTATTCATTTTCTAAGAAGGAGGCCATCCTGCAATGGCTTCGAGTTGAGGTGAAAGTTTCTGAGATAA AGTTACATGTGTAG
AA sequence Show only first row Show all	>Potri.015G102401.1 pacid=42775492 polypeptide=Potri.015G102401.1.p locus=Potri.015G102401 ID=Potri.015G102401.1.v4.1 annot-version=v4.1 MASPREHIEHIRKTTFSIGGEKNPLAPMLDQAVKYLSAELYTKDVHFLMELIQNAEDNDYLEGVDYLEGVDPSLEFVITSRDITATGAPATLLIFNSEKG FSAKNIESICSVGNSTKKGNRKRGYIGEKGIGFKSVFLITPQPFIFSNGYQIRFNEKPCPHCNLGYVVPEWVEENPSLSDIKQIYGSNSTLPTTTIVLPL KPNKVKPVKQQLSSIHPEVLLFLSKIKSLSVREQNEDPRLNTVSAIAITKRTNFRARESMDAESYTLHLSAEENNTDEQDRECSYSVWKQKFPVKKKNKI EKRMGVKDWVITLAFPNGKRLRRGRSLPGIYAFLPTEMVTNLPFIIQADFILASSRETILLDDNWNQGILDCVPLAFINALVSLVKMREDAPVSSLPRLF QFLPIKSSHYPTLNAVSESIKVKLAEEEIVPSEPFTDQKFFHKPSEIGRIMPAFWSVLNKARKEGVRFDNPSSHGWHVLSSHFDKPEYDHILDFLGVGHV NNEWYARCIRSSNLLMGVSEDVYLQILLFVANNWRTKFCTTTMGDIPLIKYVDRDGSVSLCSINESAQKNSGRLLCRSHETHYTSWLIDWNKEFGFVGNR FFLPKSTQEAIYSFSKKEAILQWLRVEVKVSEIKLHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102401 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Potri.015G067500 [exp]	4.89	0.7554	TFIIB1.1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103000 [exp]	5.47	0.8089
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184000 [exp]	11.61	0.7438
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	13.22	0.7225
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188000 [exp]	18.16	0.7116
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188100 [exp]	19.44	0.7362
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	23.23	0.7516
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187900 [exp]	24.73	0.7157
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.010G184700 [exp]	32.52	0.6903
AT1G26780	MYB	LOF1, ATMYB117	LATERAL ORGAN FUSION 1, myb do...		Potri.019G040900 [exp]	36.66	0.6789

Compare expression of checked genes

Potri.015G102401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.