Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 1796 / 0 DNA binding;ATP binding (.1) AT3G28020 172 / 8e-48 unknown protein AT4G13750 150 / 8e-36 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G102700 [exp] 3117 / 0 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.015G102200 [exp] 3116 / 0 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1) Potri.012G103700 [exp] 2803 / 0 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1) Potri.015G103000 [exp] 2532 / 0 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102401 [exp] 912 / 0 AT3G48770 771 / 0.0 DNA binding;ATP binding (.1) Potri.015G102301 [exp] 817 / 0 AT3G48770 389 / 1e-120 DNA binding;ATP binding (.1) Potri.001G317200 [exp] 164 / 3e-40 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G102501 [exp] 77 / 1e-16 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004567 [exp] 1935 / 0 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1) Lus10032551 [exp] 170 / 9e-46 AT3G48770 145 / 9e-38 DNA binding;ATP binding (.1) Lus10016661 [exp] 155 / 2e-37 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G103100.3 pacid=42775538 polypeptide=Potri.015G103100.3.p locus=Potri.015G103100 ID=Potri.015G103100.3.v4.1 annot-version=v4.1 ATGGCAACTCCAAAACAACACATAGAGCACATAAGAAAAACCACATTCTCAATAGGAGGAGAAAAGAACCCTTTGGCTCCTATGCTTGATCAGGCTGTCA AGTATCTTTCTGCTGAACTCTACGCTAAAGATGTCCACTTTCTTATGGAACTCATTCAGAATGCTGAAGATAATGAATACTTGGAACGGGTGGATCCTTC ACTTGAGTTTGTCATAACATCTCGAGATATTACAAACACTGGCGCACCTGCTACTTTGCTCATCTTCAATAATGAGAAGGGTTTTTCTGCAAAAAATATC GAGTCCATTTGCAATGTTGGAAATTCCACTAAGAAAGGGAACCGGAAGCGTGGCTATATTGGGGAGAAAGGAATTGGATTCAAGAGTGTGTTTCTTATTG CTGCTCAGCCTTACATATTCAGCAATGGCTATCAGATACGATTCAATGAAAAGCCCTGTCCACACTGCAATCTTGGATACATAGTTCCTGAATGGGTTGA TGATAGCCCATCTCTTTCTGACATAAAGCAGATTTATGGTTCCGCTTCTACCCTCCCAACTACTACACTGATTTTGCCCCTGAAGCCTGACAAGGTGAAC CCCGTGAAGCAGCAGCTGTCGAGTATTCATCCTGAAATCCTTCTGTTCCTTTCAAAGATAAAACGCCTTTCTGTCAGGGAAGAAAATGAGGATCCCAGGC TCAACACTGTTAGTGCAGTAGCTATTACCAAAGAGACAAATTTCGTGCAAAGGAAAAACATGGATGCCGAGTCCTACACACTCCATCTGTCTGCAGAGGA AAACAGTGATGAATTTGAAAAAGAATGCAGCTACTACTTGTGGAAGCAGAAATTTCCTGTCAGGGAGGAAAACAAAGTCGACATGAGAATGGAAGTGGAG GATTGGGTGATCACTTTGGCTTTTCCTAATGGAGAGCGCCTCCATAGGGGAATGAAGTACTCCCCTGGAATATATGCATTTCTTCCAACCGAGATGGTGA CCGGCTTTCCCTTCATAATTCAAGCAGATTTTATTCTAGCATCATCAAGGGAAACAATACGATGGGACAACATATGGAACCAGGGAATTCTTGATTGTGT TCCCTTTGCTTTTATCGAAGCATTAGTCTCATTAGTCAAAACAGTGGATGGTGCACCAGTATCTAGTCTGCCTCGAATGTTCAAGTTCTTGCCGGTCCAT AGGTCCCCCATTGAAAAGTTGAATTCAGTGAGGGAATCAATTAAAGCGAAGCTGGCTGAAAAGGATATAATTCCAAGTGAGTCATACACAGCACAACAGT TCTTTCATAAACCACGTGAAGTTGGCCGATTAATGCCTGCTTTCTGGAATATACTGAAGAAGACAAGGGAGCGAGGAGTGAGCTTGCACAAACTTTCATC CCATGGTTGCTATGTTCTGAATTCTTCATTTGATAAGCCAGAGTATGATCACATACTGGAGTTCTTGGGGGTGAGACCGGCAAGTAGTGGGTGGTATGTA AAGTGCATTCAAGGCTCTAATATTGTAATGGGAGTCTCAGAGGAAACATACCTGGAGCTTCTTCATTTCCTTGCTGTTAATTGGCAGTCCGAGTTTCACT GCTCAGGCATGGGGAACATTCCACTAATTAAATATGTGGGTGCCGATGGGAGCGTTTCTTTGTGCTCTGTTAATGAATCTGCTCACCGGAATAGTAAAAC TCTGTGCCTATCACGTTACTCTTCTCATGTCTCATGGTTGATTGATTGGAACAGGGAGTTCCGATGCATGGCGAATCATTTTTTTGTGCCTAGAACTACA CAAGTGTTGGGCTATTTCCAGAACTCAAACACACACAATTTACGTGAAGCTATCTCTTCATCATCTAACAAAGAACTGGTGTTAGAATGGCTTGAAGACC TGGTTGAAATCACTACTTTAAGCGTATATAACTATGCAGTTCTCTACGGAGATCAAGTCAGTTGCGACCAGAAACTTGTGATTGCCTATGCTCACTTCTT ATATCACTCATTCCAAAATGAATATCTATCGGAGAGGGAAGTTGTTTCTTTGTGTGGTAAAATGCCACTTGTTGATAGCTATGGCCATGTGATCAAAGCA AGGAATGCGGTTTTAGTCCCAGCTACTGAAAGCAAATGGGTGCAATTGATTGGTTCTAATCCTTGGAGGGAAGAAAGCTATGTTGAGTTAGGAGAAGACT ACTTGCATCCTGCATGTTTTGCTGGCACAAGCACGGTGGGAAACCAGCTCATGAATTTCCTTAAAGTTTATGTTAAGGCTTCTGATATTCCTCACATATC CCCCCCCAATGCTGGAATACCTACTGCGTCAACAGGACTTACCAAACAAAATGCATTTCTGCTGTTGGATTGGATTCAGGAGCTGAAACGGAGTGGAATT TGCATTCCAGAAAGGTTCATGGCTTGCATACAGGAGGGTAGGTGGCTTAAAACTACTATGAATGGCTCTCCTGGTTACAAACCACCATCACAGTCGTTCC TACTTGCTTCAAGCAACAGAAGCTCAAACTGGGGAAACATTTTGCAGAGTGCATATGTGCTTGCCGATATTCCTTTGATAGATCAGGATTTTTATGGTCC TAAAATTACGGAGTATAGAGAGGAGCTACGGACAGTTGGGGTCATGTTTGAGTATGGAGAGGCATGCAAATTTATCGGGAACCATCTCATGTCTTTGGCA GCTTCATCCGCTTTAACTAAAAGCAATGTTATCTCCATACTGAATTTCATCAGATTTTTAAGGCAGAAATTTCTTTCTCTAGATGAATTCATTGGCAGAA TTAAAGAAGAAAGGTGGCTAAGGACTTGTTGGGGTGATAGGTCTCCGGTTGGATCTGTTCTATATGATCAGGAGTGGACAACTGCGAGGCAAATTAGTGA CATCCCTTTCATTGATGAAGATTACTATGGCGAGGACATCCTTCTTTTCAAACCAGAACTCCAGTTGCTTGGCGTTGTAGTTGGCTTCAATAAAAGTTAT CAATTGGTTGTTGATTGCTTTAAATCGCCTTCATGCTTATCTACTCTGACAAAGGAGGCCTTTCTTCTGGTTTTGGATTGCATGCATCATTCTAGTTCTG ATCACAAACTAGTTAATGCAGTGAAAAGTACAAAATGCTTAAAGACAAACTTAGGTTACAAATGTCCTGGCGACTGTTTCTTGTTTCATCCTGAATGGGG TTGTCTTCTAAAGGTTTTTGGTGGTTTCCCGTTGGTTGATAGTAATTTCTATGGAAGCAGCATCATCTCTTACAATACGGAGTTGAAGGAGCTGGGAGTA AAGGTAGACTTTGAGGATGCTGTCAGAGTGTTTGTTCAAACTTTTATGAAGCAGGCATCTTTGTCTTCCATTACAGAGGAAAATGTGTTTTCATTCATAT CATGCTACAGAAAACTGAAGGGAACTCCAAACAAATTTCCTTCGGATCTTAAGAAGTGCATCCGTGAGGTGAAATGGCTGCGGACTCGGCTTGGTGATTA TAGATCTCCAAGAGACTGCATCCTGTATGGTCCTGAATGGGAGTCAATCCTTGCAATTACTCTCCTTCCGTTCATTGATGACAGTGACAAGTTCTACGGG AAGGGTATTCGTGAATATGAAAAGGAGCTGAAGAAGATGGGAGTTGTTGTTGAATTTAAAGCTGGTGTGAAATTTGTGGCTGCGGGTCTTTATTTTCCTC TGAATCCTTGTCACATAACTTCTGAGAATGTGCTCTCTTTGCTGGAGTGCATCCGAATCTTATTGCAAGAGAAGGATTACTCCTTTCCTGACACTTTTCT AAAAAATGTTCGTCGAGAGTGGTTAAAAACCCATGTTGGCTACAGAACTCCAGACAACTGTTGCTTGTTTGATTCCAAATGGGGTTTGGATTTGAAGAGC ACTGACGGACCTTTCATTGATGAAGTGTTTTATGGATCTAACATCACATCATATAGGGAAGAGCTGAGCTCTATAGGAGTTACTGTTAAAGTGGAAAAGG CATGTCCATTGCTAGCTAGTAACTTATATCACCATTCTGATTTTTCCACTATTGTTCGAATATTCAAATTTTTGAGCAGAAATGAGTGGATGCCAGAAAG TGATGCAACCAGAAAGATTTGGATTCCTAATGGACATGAGAACGGTAAGTGGGTTAATCCAGAAGAATGTGTCCTGCACAACAGAGATGGTCTTTTTGGC CAGCAGTTTAATTTTTTGGAGGAATACTATGAGCCGGACTTGCTTTGTTTCTTCTCCATTGCATTTAATGTTAAATCCAATCCTTCATTTGATGATTACT GTAAGCTTTGGAAGGTTTGGGAAAGTTTAGGAAGACCATTGACACATGCTGAGTGCTGTGCTTTTTGGGAGTGTGTTATGATGCAAAGGAGCTCAAGGAC AGAGAGAACCCTTGCTGATGATTTGGTTAAGCTACCTGCTGTTTTGGGCTCTGGTGAAATCTTGTTGTCCAGCAAGAGTGATGTTTTTATTGCTGATGAC CTTCTACTAAAGGACCTATTTGAGAAGTTCTCATGGCTCCACCCGATATTTGTCTGGTGTCCTCAGCCAAACCTGCCTTCTTTGCCTCGAACTAGGTTGC TTGAAGTCTACAGGAAAATTGGGGTTCGCACTATATCTGAATCAGTGCTGAAGGAAGAATTGTCATTGGCAGATGGTGTAGAACTTAGTCAGATGGATTC GAGGGATGCTGGGATTGGAAAGGAGCTGATTAGACTGATTCTTGGCTTTCTAGCAGATCCTTCTCTTGATATGGAAGCAACAAAGAGGCATGGAGCTGTC CAGTGCCTCCTGAATCTTAAGGTGCTGGAGACTATGGAGCCAATTACTGTAAGCTATAGTTTATTGCTTTCTGATGGGGAACCTCTGAAGGTGAAAGCAG ACCGTATGATTCGCTGGGATAAAGAGTGTTCAAAGTTTTTCACACAGAAGATGGATAAAGCTGGCGGCCAGAAAAATCTTATTGAATATGCAACCTCTTT TTCTGAAGTACTTGCTCGGGGGGTGTTATGGGATAAAGAAGATAAAATAAAAGCACTTTCTGAACTGACCAAGTTGGCTTTCCTCCTGAATTTTGATGAA CAAGCTGTTCAATTCTTGATGAAATCTAATAATCTTCAAACTTTTCTGGAGGACGAGGAGTTCCTTAATGCTGCCTTCCCTTCTGTTTAG
AA sequence Show only first row Show all	>Potri.015G103100.3 pacid=42775538 polypeptide=Potri.015G103100.3.p locus=Potri.015G103100 ID=Potri.015G103100.3.v4.1 annot-version=v4.1 MATPKQHIEHIRKTTFSIGGEKNPLAPMLDQAVKYLSAELYAKDVHFLMELIQNAEDNEYLERVDPSLEFVITSRDITNTGAPATLLIFNNEKGFSAKNI ESICNVGNSTKKGNRKRGYIGEKGIGFKSVFLIAAQPYIFSNGYQIRFNEKPCPHCNLGYIVPEWVDDSPSLSDIKQIYGSASTLPTTTLILPLKPDKVN PVKQQLSSIHPEILLFLSKIKRLSVREENEDPRLNTVSAVAITKETNFVQRKNMDAESYTLHLSAEENSDEFEKECSYYLWKQKFPVREENKVDMRMEVE DWVITLAFPNGERLHRGMKYSPGIYAFLPTEMVTGFPFIIQADFILASSRETIRWDNIWNQGILDCVPFAFIEALVSLVKTVDGAPVSSLPRMFKFLPVH RSPIEKLNSVRESIKAKLAEKDIIPSESYTAQQFFHKPREVGRLMPAFWNILKKTRERGVSLHKLSSHGCYVLNSSFDKPEYDHILEFLGVRPASSGWYV KCIQGSNIVMGVSEETYLELLHFLAVNWQSEFHCSGMGNIPLIKYVGADGSVSLCSVNESAHRNSKTLCLSRYSSHVSWLIDWNREFRCMANHFFVPRTT QVLGYFQNSNTHNLREAISSSSNKELVLEWLEDLVEITTLSVYNYAVLYGDQVSCDQKLVIAYAHFLYHSFQNEYLSEREVVSLCGKMPLVDSYGHVIKA RNAVLVPATESKWVQLIGSNPWREESYVELGEDYLHPACFAGTSTVGNQLMNFLKVYVKASDIPHISPPNAGIPTASTGLTKQNAFLLLDWIQELKRSGI CIPERFMACIQEGRWLKTTMNGSPGYKPPSQSFLLASSNRSSNWGNILQSAYVLADIPLIDQDFYGPKITEYREELRTVGVMFEYGEACKFIGNHLMSLA ASSALTKSNVISILNFIRFLRQKFLSLDEFIGRIKEERWLRTCWGDRSPVGSVLYDQEWTTARQISDIPFIDEDYYGEDILLFKPELQLLGVVVGFNKSY QLVVDCFKSPSCLSTLTKEAFLLVLDCMHHSSSDHKLVNAVKSTKCLKTNLGYKCPGDCFLFHPEWGCLLKVFGGFPLVDSNFYGSSIISYNTELKELGV KVDFEDAVRVFVQTFMKQASLSSITEENVFSFISCYRKLKGTPNKFPSDLKKCIREVKWLRTRLGDYRSPRDCILYGPEWESILAITLLPFIDDSDKFYG KGIREYEKELKKMGVVVEFKAGVKFVAAGLYFPLNPCHITSENVLSLLECIRILLQEKDYSFPDTFLKNVRREWLKTHVGYRTPDNCCLFDSKWGLDLKS TDGPFIDEVFYGSNITSYREELSSIGVTVKVEKACPLLASNLYHHSDFSTIVRIFKFLSRNEWMPESDATRKIWIPNGHENGKWVNPEECVLHNRDGLFG QQFNFLEEYYEPDLLCFFSIAFNVKSNPSFDDYCKLWKVWESLGRPLTHAECCAFWECVMMQRSSRTERTLADDLVKLPAVLGSGEILLSSKSDVFIADD LLLKDLFEKFSWLHPIFVWCPQPNLPSLPRTRLLEVYRKIGVRTISESVLKEELSLADGVELSQMDSRDAGIGKELIRLILGFLADPSLDMEATKRHGAV QCLLNLKVLETMEPITVSYSLLLSDGEPLKVKADRMIRWDKECSKFFTQKMDKAGGQKNLIEYATSFSEVLARGVLWDKEDKIKALSELTKLAFLLNFDE QAVQFLMKSNNLQTFLEDEEFLNAAFPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103100 [exp]	0	1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	2.00	0.9507
AT4G29920			Double Clp-N motif-containing ...		Potri.006G073800 [exp]	2.44	0.8963
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	4.00	0.9121
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	4.47	0.8989
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	8.12	0.8680
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	10.77	0.8577
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187900 [exp]	10.95	0.8569
AT2G26600			Glycosyl hydrolase superfamily...		Potri.006G067500 [exp]	11.13	0.8275
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	11.53	0.8958
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	11.83	0.8812

Compare expression of checked genes

Potri.015G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.