Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50860 715 / 0 Protein kinase superfamily protein (.1) AT1G54610 635 / 0 Protein kinase superfamily protein (.1.2.3) AT1G53050 603 / 0 Protein kinase superfamily protein (.1) AT1G03740 551 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 546 / 0 Protein kinase superfamily protein (.1.2) AT3G05050 546 / 0 Protein kinase superfamily protein (.1) AT1G09600 545 / 0 Protein kinase superfamily protein (.1) AT5G44290 542 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 531 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 526 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G103900 [exp] 949 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 692 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 679 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 673 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 625 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 619 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 575 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 570 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 560 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012805 [exp] 685 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 671 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 670 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 670 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 614 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 612 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 567 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 561 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 547 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 546 / 0 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G103300.1 pacid=42775633 polypeptide=Potri.015G103300.1.p locus=Potri.015G103300 ID=Potri.015G103300.1.v4.1 annot-version=v4.1 ATGGGCTGTGTTCTCGGCAAGCCCGCCTCCAGGGATCGCCAGAGTCGTGAAGTATCCTCCGACCGTGACCGGAGCTCCGATGAACCACCCGTTGACGTCA CCGGATCCGTTAACGCCGCAGTGAAGGTTAAGAGGGAGAAAGCAACAACATCAACGCAGAAGCAGAATGCAGCGCGACATACCGGCGATTTCCCGGCTGT GGATGTCCAGGGGACGACTGAAAGGCGGAGGCCACGGCCAGAAGTTAGTCTGTGCTATCAGCAAGGGTGGCCATCGTGGTTAATGGCGGTTGCCGGTGAT GCCATCGGCGAATGGACTCCTCGCCGAGCTAACACATTCGAGAAGCTTGACAAGATTGGGCAAGGGACATATAGCAATGTGTATAAAGCAAGGGATTTAA TAACAGGAAAGATAGTGGCTTTAAAGAAAGTGAGGTTTGATAATTTGGAGCCAGAGAGTGTTAAATTTATGGCAAGAGAGATTCTTGTTTTAAGAAGATT AGACCATCCAAATGTTCTTAAGCTTGAAGGTTTGGTCACTTCAAGAATGTCATGTAGTCTTTACTTGGTTTTTGAGTACATGGAACATGATCTTGCCGGG CTGGCGGCACGCCGAGGCGTCAAGTTCACTGAACCTCAGATAAAGTGCTACATGAAGCAGTTGTTATCCGGGATTGAGCATTGCCACAACCATGGTGTTC TGCACCGTGATATCAAGGGTTCCAATCTCCTTATAGATAATGAAGGAATTCTAAAAATTGCTGATTTTGGACTGGCTACTTTCTATGATCCTGATCGCAA GGTTCCTATGACCAGTCGAGTTGTCACCCTTTGGTACCGCCCCCCTGAACTTCTTCTTGGGGCAACTTATTATGGTGCTGGTGTTGACCTCTGGAGTGCC GGCTGCATTTTGGCAGAGCTGCTTGCTGGGAAGCCAATAATGCCTGGACGGACAGAGGTTGAACAACTGCACAAGATATTTAAGTTATGTGGTTCACCAT CTGAGGAATATTGGAAGAAATCCAAATTGCCAAATGCAACACTTTTTAAACCACAGCAGCCTTACAAACGATGTATAGTAGAAACCTTCAAAGATTTCCC CACTTCTGCTCTGCCTTTAATTGAAACTCTTCTTTCGGTAGATCCTGATGATCGAGTCACTGCCACTGCAGCTCTAAATAGTGAATTCTTCACCACTGAA CCTTATGCATGTGAGCCGTCGAGTTTGCCTAAATATCCTCCCAGTAAAGAATTGGATGTGAAGTTGAGAGATGAAGAAGCTAGAAGGCAAAGGGGCCTTG GTGGAAAAGGTAATGCTGTTGATGGTGCAAGAAAAACAAGAATTCGTGATCGGGCTGGTTGGGCAATCCCAGCTCCAGAGGCCAATGCAGAGAATCCAGC AAACCTAGATAGATGGAGGGCCATGACACAAGCAAACGCTAAGAGCAAGAGTGAGAAATTTCCACCTCCTCATCAGGATGCAGCAGTTGGACATCCTATG GATGCATCACATAAAGGTGGCCTTGTTTCATTTGGTACATCAGATACTTCCTTCTGTTCATCAACATTCGATTCAAAATCATCTTCTATTAAAAGTGCTG GCGCCATTGGAGGCCCTTCCAGAAGAAGGAAAACCAATAAAGAAGATCCCCAGATGGCTCCACCACGGAAATTTATCCGTCCATTCAATCCATCATCAGT AGCCCTATCAATGAATCTGCTATTCAAGGGTAAATCAGAGGTTTTTGGCAGTAGGAGGTAA
AA sequence Show only first row Show all	>Potri.015G103300.1 pacid=42775633 polypeptide=Potri.015G103300.1.p locus=Potri.015G103300 ID=Potri.015G103300.1.v4.1 annot-version=v4.1 MGCVLGKPASRDRQSREVSSDRDRSSDEPPVDVTGSVNAAVKVKREKATTSTQKQNAARHTGDFPAVDVQGTTERRRPRPEVSLCYQQGWPSWLMAVAGD AIGEWTPRRANTFEKLDKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAG LAARRGVKFTEPQIKCYMKQLLSGIEHCHNHGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPDRKVPMTSRVVTLWYRPPELLLGATYYGAGVDLWSA GCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPNATLFKPQQPYKRCIVETFKDFPTSALPLIETLLSVDPDDRVTATAALNSEFFTTE PYACEPSSLPKYPPSKELDVKLRDEEARRQRGLGGKGNAVDGARKTRIRDRAGWAIPAPEANAENPANLDRWRAMTQANAKSKSEKFPPPHQDAAVGHPM DASHKGGLVSFGTSDTSFCSSTFDSKSSSIKSAGAIGGPSRRRKTNKEDPQMAPPRKFIRPFNPSSVALSMNLLFKGKSEVFGSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50860			Protein kinase superfamily pro...		Potri.015G103300 [exp]	0	1
AT5G18500			Protein kinase superfamily pro...		Potri.008G214200 [exp]	12.44	0.8172
AT2G40070			unknown protein		Potri.008G066900 [exp]	15.39	0.8191
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	17.66	0.8099
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	21.07	0.8188
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	22.13	0.8232
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.006G052600 [exp]	34.98	0.7571	CESA4.1
AT3G55420			unknown protein		Potri.008G055800 [exp]	42.60	0.7933
AT3G17900			unknown protein		Potri.010G033900 [exp]	47.33	0.7152
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	47.77	0.7944
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	51.02	0.7985

Compare expression of checked genes

Potri.015G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.