Plant FIBer expression Database

Potri.015G103500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26890 231 / 2e-66 unknown protein
AT5G41110 207 / 9e-58 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G104200
[exp]
1019 / 0 AT5G41110 302 / 2e-93 unknown protein
Potri.001G324700
[exp]
381 / 9e-122 AT3G26890 415 / 1e-135 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031999
[exp]
259 / 6e-77 AT3G26890 400 / 3e-131 unknown protein
Lus10035170
[exp]
258 / 2e-76 AT3G26890 388 / 1e-126 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13889 Chromosome_seg Chromosome segregation during meiosis
PF13915 DUF4210 Domain of unknown function (DUF4210)
Representative CDS sequence
>Potri.015G103500.1 pacid=42776070 polypeptide=Potri.015G103500.1.p locus=Potri.015G103500 ID=Potri.015G103500.1.v4.1 annot-version=v4.1
ATGGGCTTGCCTCAGTTCTCCTCCAGCAGCATTGCCGAGGAAGCAGCCACATCTTTGAGTACAATTGTGCAAACTTCACCTCGAATTGTTGGTGTGAGTA
GTTGTGATTTGAGTGGGATGTATGGAGGAAACCTTGGATATCGAATGCAGGTGGAAATGCACTGCGCTTCTCTTACAGATTTCCAAAAGAAAACCGTTGT
AGAAAATAAGAAGGGCTTGTTAAGTCATAAAAGTGGACAGAATATCCAGACACCTATTCCTAGGATTGTTGGTTTTGAATCAAGGGGATTGAATTCTCCT
GTTGGTGCATTTAATGGAAACCAAACTGCTTCTACTGTAGTTACTATCGGCTCTAATGCAGTTGAGTCCACTGGATCAGACAAGAAGCGGTTATTGTCTC
CTCTGAGTGGGATGCTTCACCCTGATAAGTTTAATGGTGCTTCCCTAGACACCGGTGATGGTGTTTGTAAGAGTAATCTATGGGGTAGCAAGGACAATTA
CAAGGTTTCTATGTCACAAGAACATAAAAAGGCTCATATTGGAAATTCCAGTTATTTCAAGTGTTCAAACTGGTCTGCATCTTGTCTTCCGGAATGGAAG
AATTCACCTGTTGATAGTTGCAGGGAAAACTCCATATTCTTTTCTGATGGTCCTGTGCTTGAGACAGAGCTCAAGGCACACGATCAATTTATGTCTCCAC
CTGGACTTAATTATTTTGGAAAAACAACAAAGGCAAGACATCAAACCAGCGCTATGGCAATTCCCTTAATGAAAGCAGCATCACCTCCCTTGTCATTGTC
CCCTCTCGGTCCAAAACTCTCTGAAGGAATAAAATCTCCAGGAGGGTGCAGCCATATCACCAGACGGCTTGATGATGGCTATCTTACCTTCACTGATATG
GAACAGTCGCTTGATGGAACTGTATCTGGCATTTTATCTTCCCGGAAGGATAGGGTTTTTAAAATGCTTGATGAATCATTAGATGATTTTGATAATTTGT
GCACAAAATTTGATGTGTTTGCTCCTGAGATTACCAGTGGCATTGGACAGCCTTGGTGTGAGGATTCAAATCTTAGTTCCCTAAATGTCAAATTATGTAG
AAGTTTTACTAGCGTGCCTGTTAGAAGGTCTTTGGTTGGTTCGTTTGAGGAATCCTTGTTATCTGGTCGGTTATCATCTGGTAAAGTTAGTCAGAGAATT
GATGGGTTCCTTGCTGTTCTAAATGTCACTGGAGGAAATTTCTCTCCAAAGGCACAAAAACTTCCTTTTACAGTAACTAGCGTGGATGGGAATAACTACT
TACTCTACTATTCATCGATAGATCTTGGAGGGAATGTGCAAGAAAATAGTGACCAAAAAATGAGGAGAAGCCTTAGCATTGATGATTCACGATCTGATAG
AAGCAGGCTACGAATACCAATGAAAGGGCGAATACAATTGGTTCTCAGTAATCCAGAAAAGACACCCATTCACACTTTCTTTTGTAGCTATGATTTAAGT
GACATGCCAGCTGGTACCAAGACATGTCTGCGCCAAAAGATCACCCTATCTTCATCAGCACCAGCTTCTTTACCAGTGAATGTAAAGAACAGAGATTCTG
ACATGAAAAATGATGCAAAGCCATCTTCAGTCCCTAAAACTAATAATTGCTTGCCTCATGGAAGAGATGCTACCAATTCAATTCGACTTGACACTGTACA
TAATACTAGATCTCCTGACCATAGCAGATTCAGTAATAGTGAATGCAAAAATACTGGTGTGGAGGGCTGCAGCCCTCCAAATTCATCTCGTTTGTGCATA
AGAAAATCTGTACATGGTCCTTCAAAGGTCAATGAGAACACCACTGGAGCTGGTGCTCTACGATATGCTCTTCAGCTCCAATTTATGAGTCCACTTCCCA
AGAAAAGTTTAAGGTCATTTCAGAGGAGCACATCTGATCCTTCATCTGTACCAGCAGCAAACAAGATGGACATTGTCAGTGAGCAACGCTTCTACTTGTA
TAGCAATATGAGGGTAGTGTTTCCACAGCGCCATTCTGATTCAGATGAGGGCAAGGTATATTTTGTTGGAGTTTATTATTGTCCTTTAATGAGAAGAAAT
CTTCTTTCCGTGAAAAGCATGCTTTGA
AA sequence
>Potri.015G103500.1 pacid=42776070 polypeptide=Potri.015G103500.1.p locus=Potri.015G103500 ID=Potri.015G103500.1.v4.1 annot-version=v4.1
MGLPQFSSSSIAEEAATSLSTIVQTSPRIVGVSSCDLSGMYGGNLGYRMQVEMHCASLTDFQKKTVVENKKGLLSHKSGQNIQTPIPRIVGFESRGLNSP
VGAFNGNQTASTVVTIGSNAVESTGSDKKRLLSPLSGMLHPDKFNGASLDTGDGVCKSNLWGSKDNYKVSMSQEHKKAHIGNSSYFKCSNWSASCLPEWK
NSPVDSCRENSIFFSDGPVLETELKAHDQFMSPPGLNYFGKTTKARHQTSAMAIPLMKAASPPLSLSPLGPKLSEGIKSPGGCSHITRRLDDGYLTFTDM
EQSLDGTVSGILSSRKDRVFKMLDESLDDFDNLCTKFDVFAPEITSGIGQPWCEDSNLSSLNVKLCRSFTSVPVRRSLVGSFEESLLSGRLSSGKVSQRI
DGFLAVLNVTGGNFSPKAQKLPFTVTSVDGNNYLLYYSSIDLGGNVQENSDQKMRRSLSIDDSRSDRSRLRIPMKGRIQLVLSNPEKTPIHTFFCSYDLS
DMPAGTKTCLRQKITLSSSAPASLPVNVKNRDSDMKNDAKPSSVPKTNNCLPHGRDATNSIRLDTVHNTRSPDHSRFSNSECKNTGVEGCSPPNSSRLCI
RKSVHGPSKVNENTTGAGALRYALQLQFMSPLPKKSLRSFQRSTSDPSSVPAANKMDIVSEQRFYLYSNMRVVFPQRHSDSDEGKVYFVGVYYCPLMRRN
LLSVKSML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26890 unknown protein Potri.015G103500
[exp]
0 1
AT4G38060 unknown protein Potri.002G106300
[exp]
1.41 0.7364
AT4G30210 AR2, ATR2 P450 reductase 2 (.1.2) Potri.018G092100
[exp]
3.16 0.7749 PSC450.1
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.003G167800
[exp]
20.88 0.7308
AT2G01060 GARP myb-like HTH transcriptional r... Potri.016G001100
[exp]
24.24 0.7114
AT1G71090 Auxin efflux carrier family pr... Potri.017G122400
[exp]
25.69 0.6679
AT1G51340 MATE efflux family protein (.1... Potri.009G053700
[exp]
34.52 0.7108
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G071900
[exp]
41.89 0.6840
AT5G23590 DNAJ heat shock N-terminal dom... Potri.009G138100
[exp]
43.58 0.6729
AT2G19130 S-locus lectin protein kinase ... Potri.013G121550
[exp]
45.25 0.6953
AT5G47650 ATNUDX2, ATNUDT... ARABIDOPSIS THALIANA NUDIX HYD... Potri.001G368000
[exp]
58.99 0.6783

Potri.015G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.