Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LJLCB2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23670 829 / 0 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48780 818 / 0 ATSPT1 serine palmitoyltransferase 1 (.1) AT3G48790 520 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G36480 138 / 2e-35 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT5G04620 106 / 4e-25 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104500 [exp] 918 / 0 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.012G043800 [exp] 142 / 7e-37 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 138 / 2e-35 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.001G126700 [exp] 87 / 6e-18 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016717 [exp] 862 / 0 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10036011 [exp] 856 / 0 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10013317 [exp] 141 / 2e-36 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10005205 [exp] 132 / 3e-33 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10009024 [exp] 90 / 7e-19 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.015G103800.1 pacid=42775773 polypeptide=Potri.015G103800.1.p locus=Potri.015G103800 ID=Potri.015G103800.1.v4.1 annot-version=v4.1 ATGATTAAGATTCCATATTTGACCGCCTTGAGCACCTACTTCAGCTATGGATTGCTCTTCGTTTTTGGCCATTTCCGTGATTTCTTTCGTAAAATCCTCG ATTGCTTCCACCCCAGCAATCTTCAGGGCTACGCACCGATTTGTCTAGGACCCGAAGACTTTTACATTCGTCGATTATTTCTTCGAATTCAGGATTGTTT TGGACGTCCGATTTCGAGTGCTCCGGACGTGTGGTTTGATGTTGTCCAGCGTTTCTCCAATGACAATAACAAGACTTTGAGACGGACATCGAAGGTAACG AGGTGTCTGAACTTGGGGTCGTATAATTATCTCGGGTTCGCTGCCGCTGATGAGTATTGTACGCCTCGTGTTATTGAGACATTGAAGAGGTTTTCACCGA GTACTTGCAGTCCTCGTGTTGATGGAGGAACTACGACACTGCATAACGAACTGGAGGAGATTGCTGCAAACTTTGTTAGGAAGCCAGCTGCCATAGTTTT TGGCATGGGCCATGCCACAAACTGTACCACTCTCCCTGTTCTGATCGGAAAGGGAGGGTTAATAGTTAGTGATTCATTAAACCACAACTCAATTATCAAT GGTGCTCGTGGTTCAGGAGCAACAATTCGGGTTTTCCAACACAATACACCATCTCACTTGGAGGAAGTTTTGAGGCAGCATATTGCGGAGGGGCAACCAA GGACACATAGGCCTTGGAAGAAGATATTTGTCCTAGTGGAGGGTATTTATAGTATGGAAGGGGAACTCTGCAAACTTCCAGAGATTGTTTCAGTATGCAA GAAATATAAGGCATATATTTACTTGGACGAGGCTCATAGCATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTTTGTGAACTCTTAGGAGTGGACACAGCT GATGTCGATGTTATGATGGGAACTTTTACAAAATCTTTTGGATCTTGTGGGGGTTATATTGCTGGATCTAAGGAACTAATCCAATACCTTAAATACACTT GTCCAGCTCATTTATATGCAACATCAATATCGCCTCCAGCTGCACAACAAATTATATCATCCATAAAGGTTATTCTAGGAGAGGATGGTTCTAGCAGAGG GGCTCAAAAACTTGAAAGAATACGTGAAAATAGCAACTTTTTCAGATCAGAGCTGCAGAAAATGGGTTTTGACGTTATTGGAGATAATGATTCACCAGTG ATTGCCATAATGCTTTACAATCCAGGAAAAATCCCTGCATTTTCTCGGGAGTGCCTAAAGCAGAATGTTGCTGTTGTGATGAGTGCTTTTCCAGCTACCC CTCTACTTTTGGCCAGGGCACGTATTTGCATATCTGCCTGCCATGCCATGGAAGACCTTCTCAAAGCATTGGAGGTTATCAATCAAGTCGGCGACCTCAT CGGCATAAAGTACTCCCCTGCCGGGTCTGATAAACAGCATCAGGAGCAAGGCGCAATGAAGTTGGAGTGA
AA sequence Show only first row Show all	>Potri.015G103800.1 pacid=42775773 polypeptide=Potri.015G103800.1.p locus=Potri.015G103800 ID=Potri.015G103800.1.v4.1 annot-version=v4.1 MIKIPYLTALSTYFSYGLLFVFGHFRDFFRKILDCFHPSNLQGYAPICLGPEDFYIRRLFLRIQDCFGRPISSAPDVWFDVVQRFSNDNNKTLRRTSKVT RCLNLGSYNYLGFAAADEYCTPRVIETLKRFSPSTCSPRVDGGTTTLHNELEEIAANFVRKPAAIVFGMGHATNCTTLPVLIGKGGLIVSDSLNHNSIIN GARGSGATIRVFQHNTPSHLEEVLRQHIAEGQPRTHRPWKKIFVLVEGIYSMEGELCKLPEIVSVCKKYKAYIYLDEAHSIGAVGKTGRGVCELLGVDTA DVDVMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAQQIISSIKVILGEDGSSRGAQKLERIRENSNFFRSELQKMGFDVIGDNDSPV IAIMLYNPGKIPAFSRECLKQNVAVVMSAFPATPLLLARARICISACHAMEDLLKALEVINQVGDLIGIKYSPAGSDKQHQEQGAMKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	0	1	LJLCB2.1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	2.00	0.9671
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	2.44	0.9637
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	2.82	0.9519
AT3G60590			unknown protein		Potri.014G061000 [exp]	3.46	0.9593
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	4.47	0.9572
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	7.74	0.9585
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	7.74	0.9509
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	8.36	0.9458	Pt-ELSA.1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177900 [exp]	8.71	0.9401
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	10.24	0.9437

Compare expression of checked genes

Potri.015G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.