Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48820 731 / 0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08660 362 / 2e-121 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) AT1G08280 51 / 1e-06 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145400 [exp] 348 / 3e-116 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.004G184200 [exp] 51 / 7e-07 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.009G144000 [exp] 50 / 1e-06 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043193 [exp] 701 / 0 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10032547 [exp] 694 / 0 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10031992 [exp] 369 / 2e-124 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 366 / 6e-123 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10019538 [exp] 50 / 2e-06 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10043382 [exp] 49 / 2e-06 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [poplar] [flax] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Potri.015G104100.1 pacid=42775010 polypeptide=Potri.015G104100.1.p locus=Potri.015G104100 ID=Potri.015G104100.1.v4.1 annot-version=v4.1 ATGAGGTTATTGCAGCTGGGCTTCTTCCTAGCTTTAGCTTCCGGTCTCTCTGCTCTTCTCATATACATCACCGGCGTCTCCGATCTACATGTGAGCAATT CACTATCGAATCAAGATTTGGAAGCATTGCAGTCTCTACAAAACGGTTTCAAGAAGTGCGTGAGTGTAAATGGATTAGGCTTACAAGCTGTGACTACTGG AAGTGATTACTGTAAAGTTACTATAAATTTTCCTAGTGACACCGTCCCCAAATGGAAAGATCCTAAGACAGGAGAACTTGAAGGATTATGGTTCGAATTT AATCTATGTGAAGCTGTGGCAACATGGGAACAGGTGCGGAATAGTACTACAATACTCACGAGTGAGTTCATTGATGCTTTACCTAATGGATGGGAGGACT ATGCTTGGCGTAGGATCAATAAAGGAGTACTTCTTAACCAATGCAAGAACAAAACTTTATGCTTGGAGAAACTATCACTAGTACTCCCTGAGACACCACC ATATGTTCCAAGGCAGTTTGATCGATGTGCTGTCATTGGTAATTCTGGAGATCTTTTAAAAACAAAGTTTGGAAAGGAAATTGATGATTATGATGTTGTA ATTAGAGAAAATGGTGCCCCAATCAAGAATTATACAGAGTACGTGGGCAAGAAAAGTTCATTTCGTCTTCTTAACAGGGGATCTGCTAAAGCCCTTGATA AAGTTGTAGAGTTAGATGAAACAAGAAAGGAGGTCTTGATGATTAAAACAACAATACATGACATTATGAACAAGATGATTCGGGAAGTTCCGATAAACAA TCCTGTATATCTCATGCTAGGTGCATCTTTTGGATCAGCAGCTAAAGGAACTGGACTCAAGGCTCTTGAATTTGCTCTCTCTATCTGTGAGTCAGTTGAT ATGTATGGTTTCACTGTGGATCCAGGATACAAAGAATGGACAAGATATTTCTCAGAATCTAGGCAAGGTCACACTCCTCTCCATGGAAGAGCTTACTACC AGATGATGGAGTGCTTGGGTCTTATCAAAATCCATTCCCCTATGCGAGCTGATCCCAACCGTGTTGTCCATTCGGTACCAAGCCAGAGAACAATTACAGC TGCTAGAATTGCATCAGAGAAATTGTTGAGGAGGGTTGGAGCAGGATCTGAAGACCCACTACGTGCATGCTCCATTAGAAAGAAGGTAGCAAAAAGAAAG TCTGCAGCTATCTCTGGTCTCAGAAAGGCTGCTGTAGATCATCAAAATTTCGTTAAAGGCACAACCATGTATCCTTTGGAGCACCATCCTGGACATGGTC TCCTTTGCACACTGCCAAAAGATTGA
AA sequence Show only first row Show all	>Potri.015G104100.1 pacid=42775010 polypeptide=Potri.015G104100.1.p locus=Potri.015G104100 ID=Potri.015G104100.1.v4.1 annot-version=v4.1 MRLLQLGFFLALASGLSALLIYITGVSDLHVSNSLSNQDLEALQSLQNGFKKCVSVNGLGLQAVTTGSDYCKVTINFPSDTVPKWKDPKTGELEGLWFEF NLCEAVATWEQVRNSTTILTSEFIDALPNGWEDYAWRRINKGVLLNQCKNKTLCLEKLSLVLPETPPYVPRQFDRCAVIGNSGDLLKTKFGKEIDDYDVV IRENGAPIKNYTEYVGKKSSFRLLNRGSAKALDKVVELDETRKEVLMIKTTIHDIMNKMIREVPINNPVYLMLGASFGSAAKGTGLKALEFALSICESVD MYGFTVDPGYKEWTRYFSESRQGHTPLHGRAYYQMMECLGLIKIHSPMRADPNRVVHSVPSQRTITAARIASEKLLRRVGAGSEDPLRACSIRKKVAKRK SAAISGLRKAAVDHQNFVKGTTMYPLEHHPGHGLLCTLPKD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48820			Glycosyltransferase family 29 ...		Potri.015G104100 [exp]	0	1
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	3.16	0.9224
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060266 [exp]	3.87	0.9122
AT1G21480			Exostosin family protein (.1.2...		Potri.005G187400 [exp]	5.19	0.9006
AT4G38500			Protein of unknown function (D...		Potri.004G177600 [exp]	10.00	0.8790
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	11.61	0.9161
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.002G094400 [exp]	11.66	0.9158
AT5G35080			unknown protein		Potri.018G118200 [exp]	13.26	0.8938
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G097500 [exp]	14.28	0.8835
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	15.87	0.8974
AT2G22560			Kinase interacting (KIP1-like)...		Potri.007G011300 [exp]	16.43	0.8678

Compare expression of checked genes

Potri.015G104100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.