Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50915 163 / 1e-47 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68920 151 / 2e-41 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 148 / 2e-41 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 150 / 3e-41 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 150 / 9e-41 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 146 / 9e-41 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G10120 143 / 2e-39 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 143 / 2e-39 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 138 / 2e-38 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT3G57800 135 / 2e-36 bHLH bHLH060 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104900 [exp] 468 / 5e-166 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G248500 [exp] 152 / 3e-41 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 148 / 6e-41 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G062900 [exp] 145 / 2e-40 AT5G50915 127 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G117300 [exp] 147 / 4e-40 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.014G148900 [exp] 147 / 2e-39 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 147 / 2e-39 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 147 / 2e-39 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G156000 [exp] 145 / 2e-39 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003172 [exp] 151 / 1e-42 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002337 [exp] 150 / 2e-41 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041261 [exp] 145 / 5e-41 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 143 / 5e-40 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10006491 [exp] 145 / 6e-40 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 144 / 6e-40 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10013052 [exp] 147 / 1e-39 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10012484 [exp] 144 / 1e-39 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 147 / 2e-39 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021968 [exp] 140 / 4e-39 AT3G23690 163 / 5e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G104200.4 pacid=42775059 polypeptide=Potri.015G104200.4.p locus=Potri.015G104200 ID=Potri.015G104200.4.v4.1 annot-version=v4.1 ATGGCAGGCTTTTCATATCAACATCAACCGTTGTTTCCTGACTCGGCTTTCTTGCCAAGCATAGCCACACCCACTAAGAACATGAACAACAACATGTATG GTTCTTTTGAGGAAGCTGGAAACATGATGAATACCAACGGTTTCTCCCAAATTTACTCTCCTGAAACTTTTCATGAAACACCTAGTCTTGATGTTAGATT TCATCAAAGTAGCCATCCTGATGATCATAGCTATAAGGTGTCTCTTAGTGATAATGAGACTTCTTTGACTAAAAAACAGAGCACAAACTCCTCAACCGTG GTTGATAAGCTTGAAATTGGTGAGCACGTTACTCAAGAGGTAACTCCCATGGCCAGGAAGAGGAAAAGTGCTAATGGGTTCTTGAATTCTGCTCAATCAA AGTTTTTGTTACAGGATGCTAGAAAAGTGAAAAGCAAGAGACAAAATAAATGCAGTGGTGACATGAAACACGAAGAGAAGAAGCCAAAAGTTGAGAAGAA AGTTCATGGAGAGCCTCCAGCAGGCTACATTCATGTAAGAGCAAGGAGGGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTAAGAAGAGAGAGA ATCAGTGAGAGAATGAAGATACTACAGCTTCTTGTTCCTGGCTGTGACAAGATTACTGGGAAGGCCCTTATGCTGGACGAGATTATTAATTATGTTCAGT CCCTGCAAAATCAAGTGGAGTTCCTATCCATGAAGCTTGCCTCTGTTAATCCCTTGCTCTATGATTTTGGAATGGACCGTGATGCATTCATGGTTAGACC AGAGAGATTAAGTAGCATGTCTCCACCACTGCCATCTCTGCAACACAACAGTCCTATCCAGCCCACAGCTTTTGCCGACACCGCCTCCGCCACCACCGCC ACCTTTGCTACAGAAGAAAATAACTATCCTCTTATTGATAATTCTGCTACGCTTTTTCTTCAAGGAATGAGGCCTAGTGACTTCACTACTCATCAGGATA GTGGTTACCTAATGTGGGATGTGGATGAGCAAAGACAAAAATTTCTTAATCCATCTGGGCTTGCCAACAACTTGTGTTCTTTCCATTAA
AA sequence Show only first row Show all	>Potri.015G104200.4 pacid=42775059 polypeptide=Potri.015G104200.4.p locus=Potri.015G104200 ID=Potri.015G104200.4.v4.1 annot-version=v4.1 MAGFSYQHQPLFPDSAFLPSIATPTKNMNNNMYGSFEEAGNMMNTNGFSQIYSPETFHETPSLDVRFHQSSHPDDHSYKVSLSDNETSLTKKQSTNSSTV VDKLEIGEHVTQEVTPMARKRKSANGFLNSAQSKFLLQDARKVKSKRQNKCSGDMKHEEKKPKVEKKVHGEPPAGYIHVRARRGQATDSHSLAERVRRER ISERMKILQLLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPLLYDFGMDRDAFMVRPERLSSMSPPLPSLQHNSPIQPTAFADTASATTA TFATEENNYPLIDNSATLFLQGMRPSDFTTHQDSGYLMWDVDEQRQKFLNPSGLANNLCSFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.015G104200 [exp]	0	1
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.005G255900 [exp]	1.41	0.9035
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124500 [exp]	4.58	0.9105
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	5.00	0.8795
AT5G26110			Protein kinase superfamily pro...		Potri.002G049900 [exp]	5.74	0.8868
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076700 [exp]	11.83	0.8300	Pt-CYP89.3
AT3G02720			Class I glutamine amidotransfe...		Potri.017G143880 [exp]	12.64	0.8501
AT4G21580			oxidoreductase, zinc-binding d...		Potri.004G036100 [exp]	13.30	0.8345
AT4G34412			unknown protein		Potri.004G141400 [exp]	23.81	0.8775
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039300 [exp]	24.37	0.8784
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.005G231400 [exp]	27.20	0.8840

Compare expression of checked genes

Potri.015G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.