Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 494 / 2e-176 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 483 / 3e-172 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 286 / 2e-95 PHT3;3 phosphate transporter 3;3 (.1) AT1G79900 61 / 2e-10 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 60 / 7e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G47490 58 / 2e-09 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G48970 58 / 3e-09 Mitochondrial substrate carrier family protein (.1) AT4G32400 58 / 4e-09 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 55 / 3e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT2G22500 55 / 3e-08 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105100 [exp] 600 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 519 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 503 / 6e-180 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 291 / 4e-97 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 275 / 6e-91 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.010G165900 [exp] 66 / 5e-12 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 65 / 1e-11 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.006G099800 [exp] 65 / 2e-11 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 64 / 3e-11 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036014 [exp] 521 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 518 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10041519 [exp] 499 / 2e-178 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 497 / 3e-177 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10013839 [exp] 279 / 5e-92 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10026554 [exp] 278 / 1e-91 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10035975 [exp] 255 / 1e-80 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10006521 [exp] 64 / 3e-11 AT5G48970 527 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 64 / 6e-11 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 63 / 8e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.015G104400.2 pacid=42775129 polypeptide=Potri.015G104400.2.p locus=Potri.015G104400 ID=Potri.015G104400.2.v4.1 annot-version=v4.1 ATGGCCAAGAACGAGAATTCTTGTCAATCTTTGATCCCAAGCTTTCTCTACTCCTCTTCAGTTGGCTCTAGAAATGGAGGAGTACTGCAACAACCTAAGC TTTGGCCATCGTCTGATAGTGGTGATCATGGAGTGCTGTCAAAGAACTTTGTGATACCAGCACCTACGGAAAAGTTAGAGATGTACTCACCAACTTTTTA TATGGCTTGTACTGCTGGTGGGATTCTTAGCTGCGGAATCACTCACACGGCTCTCACTCCTCTTGATGTTGTCAAGTGCAACATGCAGATTGACCCATCA AAGTACAAGAGCATTTCATCAGGATTTGGGGTATTGCTCAGGGAGCAGGGAGTTAAAGGTTTCTTTAGAGGATGGGTGCCTACCTTGCTTGGCTACAGTG CTCAGGGTGCTTGCAAGTATGGATTCTATGAGTTCTTTAAGAAGTACTACTCAGATATTGCTGGCCCTGAGTATGCAGCCAAGTACAAGACCTTGATTTA TCTTGCTGGCTCAGCATCTGCTGAAATAATTGCTGATGTTGCTCTCTGCCCTATGGAGGCACTGAAAGTTCGCGTCCAAACTCAGCCTGGTTTTGCTAGG GGCTTGGCAGATGGTATGCCTAAGTTTATCAGAGCTCAAGGCTATTCTGGGTTATACAAAGGGATTGTTCCTCTTTGGGGGCGTCAGATTCCATATACAA TGATGAAATTTGCATCCTTTGAGACTATTGTGGAGTACCTATACAAGAATGTCATCCCAACACCCAAAGAACAGTGCAGCAAAACCTTGCAGCTTGGAGT CAGCTTTGGTGGTGGATACGTTGCTGGTATACTCTGTACTATTGTCTCACAGCCTGCTGACAACCTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACT GCTGGTGATGCTGTCAGGCAGCTCGGTTTATGGGGGCTCTTTACCCGCGGGCTTCCTCTCCGACTTGCCATGATAGGAACGCTTACAGGAGCTCAATGGG TTATCTATGATGCTTTTAAAGTGTTTGTTGGGCTACCAACTACTGGTGGTGCTGCTCCAGCTCCAGTTGCAGAAGCTTAA
AA sequence Show only first row Show all	>Potri.015G104400.2 pacid=42775129 polypeptide=Potri.015G104400.2.p locus=Potri.015G104400 ID=Potri.015G104400.2.v4.1 annot-version=v4.1 MAKNENSCQSLIPSFLYSSSVGSRNGGVLQQPKLWPSSDSGDHGVLSKNFVIPAPTEKLEMYSPTFYMACTAGGILSCGITHTALTPLDVVKCNMQIDPS KYKSISSGFGVLLREQGVKGFFRGWVPTLLGYSAQGACKYGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEIIADVALCPMEALKVRVQTQPGFAR GLADGMPKFIRAQGYSGLYKGIVPLWGRQIPYTMMKFASFETIVEYLYKNVIPTPKEQCSKTLQLGVSFGGGYVAGILCTIVSQPADNLVSFLNNAKGAT AGDAVRQLGLWGLFTRGLPLRLAMIGTLTGAQWVIYDAFKVFVGLPTTGGAAPAPVAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.015G104400 [exp]	0	1
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.004G172700 [exp]	1.41	0.9629
AT2G29460		GST22, ATGSTU4	GLUTATHIONE S-TRANSFERASE 22, ...		Potri.015G042000 [exp]	4.24	0.9503
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.007G065400 [exp]	13.78	0.9474	Pt-NAC1.1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134425 [exp]	13.85	0.9420
AT1G68380			Core-2/I-branching beta-1,6-N-...		Potri.008G123500 [exp]	14.21	0.9589
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134500 [exp]	19.44	0.9429
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.002G076100 [exp]	20.04	0.9430
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	22.64	0.9413
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.015G030600 [exp]	24.73	0.9102
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	28.58	0.9121

Compare expression of checked genes

Potri.015G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.