Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48860 453 / 2e-153 unknown protein AT5G23700 410 / 8e-137 unknown protein AT5G13260 390 / 2e-129 unknown protein AT4G25070 375 / 6e-121 unknown protein AT4G08630 249 / 1e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105400 [exp] 716 / 0 AT3G48860 546 / 0.0 unknown protein Potri.001G065800 [exp] 473 / 1e-161 AT3G48860 528 / 0.0 unknown protein Potri.003G164100 [exp] 464 / 5e-158 AT5G13260 529 / 0.0 unknown protein Potri.005G044600 [exp] 326 / 1e-102 AT4G08630 436 / 5e-142 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016721 [exp] 568 / 0 AT3G48860 674 / 0.0 unknown protein Lus10036015 [exp] 562 / 0 AT3G48860 675 / 0.0 unknown protein Lus10043194 [exp] 558 / 0 AT3G48860 684 / 0.0 unknown protein Lus10032546 [exp] 504 / 1e-174 AT3G48860 595 / 0.0 unknown protein Lus10001801 [exp] 446 / 3e-151 AT5G13260 591 / 0.0 unknown protein Lus10002574 [exp] 437 / 6e-147 AT5G13260 566 / 0.0 unknown protein Lus10001720 [exp] 270 / 9e-81 AT4G08630 471 / 5e-155 unknown protein Lus10004138 [exp] 243 / 5e-71 AT4G08630 464 / 2e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G104600.6 pacid=42775041 polypeptide=Potri.015G104600.6.p locus=Potri.015G104600 ID=Potri.015G104600.6.v4.1 annot-version=v4.1 ATGGATCGGAGGAGGACTGAAAGTCCGGTGTATGCACGGCAGTGGAGCAGCGATTCTCGTGGTTCAAGCGGTACGGGATCGTCATCGCCGGCGCGGATGT CACCGGCACACCCGAACTCACGGCTAGGTTCAAGCATGTCAACAATCAAGCGCACACAAAACGTTGCAGCTAAGGCCGCTGCACAGCGGCTAGCTCAGGT GATGGCGTCATCGCAGACGGCGGATGACGACGAAGACGACGACGATCTAGGGTTCCGATTCCCTGCTCCACCGAATCCGGTTTCTGCTTCGTCGGGGTTT AGTAGTGTAAACCATAGAGGGAGTAATAATGGTGTTTCGGTTATAAGACCTAATAGATCTCCGTCTCCTGCGCTAGGTCGGAACTTTATGGAGAATGTGC CTTCAGCTCGGTCTACATCAGCTGGAAGGTCATCAATGTCAGTTCGTACAGTGACAGTAGTGCCACCTAGCAAACAGTCACTAAGAACTCCCATTTCTAT ACCTCCCATCGATCCTCCATCCAGTAGGAGTAGAGATAATAAGAGGTTCACATCAGATATGGGACAGCTTAAGACTGATGCAGGAGATCAGCGTGAAGCA TCAGCACTTCGTGATGAACTTGATATGCTACAAGAAGAAAATGAAGTTATACATGACAAGCTTCGGAGTGCTGAAGAAAAACGTGAGGAGGCAGAGGCTA GAGCTAGGGAGCTCGAGAAACAGGTTGCTGCTCTTGGTGAAGGTGTATCCTTAGAAGCTAAACTGTTGAGCCGGAAGGAAGCTGCATTGCGTCAAAGAGA GGCTGCTCTTAAAGCTGCCAAACAATCGACAGATGGGAGAGATGCAGAAATTGCAACCCTTCGTACAGAACTTGAGAACTTGAAAGATGAGGCTGCAGCA GCTGCTGAACAGCTCCAAGAAGCTGAATCTGAAACGAAATCTCTTCGCACGATGACACAAAGAATGATTTTGACTCAGGAAGAGATGGAGGAGGTTGTCT TGAAGAGATGTTGGCTTGCGCGTTACTGGGGTTTAGCTGTACAACATGGGATTTGTGCAGATGTAGCAGTGTCTAAGCACGAGCATTGGTCTGCTCTAGC TCCTCTTCCATTTGAAGTTGTCATTTCTGCTGGACAAAAGGCTAAGGAGGAGTCAGATAGAGGTGGTCGTGATTCAGATAGGAGTAAAATAGTTCGTGAT TTGAGTGATCTTACTGGAGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGCGGGAATTAGCTTCTTTAAAGGTTGAGGATGCAGTTGTAC TTGCTCTGGCTCAACACAGACGACCAAGTACGGTTCGACAAACCTTCTCAGATTCGAGACCACCAGGTGATCCCAAGTTTACTGAGGCCATTGAATTAAG TGAAGCAGAGGCAGACGATGTTCTTTTCAAAGAGGCTTGGCTAACTTATTATTGGAGAAGAGCCTTGGTTCATGGTGTGGAAGAGGATATTGCAGAAGAC CGGCTTCAGTTTTGGATTAGCCGTAGTGAGCAGGCACCAACTTCACATGATGCTGTGGATGGTAATTTAAATGCTCTTATAACAAAATATAGCAAAAATT CTAGTAAACAGGCACTAATTATGTGCCTCTTTCTTTTCCTTTATGCTTTATTTAGTTATTTATGGTCCAAGGTATCATTTGCAAAAACCTATTTAAAAAA CAGTCCTTGTGGTCCATTGATGACATATCTATATCCAAGAATGTTTTTCTTTTCTTTTTGCTTCAATCTCATTTACAATAGGACTATTGATGGGGATTAA
AA sequence Show only first row Show all	>Potri.015G104600.6 pacid=42775041 polypeptide=Potri.015G104600.6.p locus=Potri.015G104600 ID=Potri.015G104600.6.v4.1 annot-version=v4.1 MDRRRTESPVYARQWSSDSRGSSGTGSSSPARMSPAHPNSRLGSSMSTIKRTQNVAAKAAAQRLAQVMASSQTADDDEDDDDLGFRFPAPPNPVSASSGF SSVNHRGSNNGVSVIRPNRSPSPALGRNFMENVPSARSTSAGRSSMSVRTVTVVPPSKQSLRTPISIPPIDPPSSRSRDNKRFTSDMGQLKTDAGDQREA SALRDELDMLQEENEVIHDKLRSAEEKREEAEARARELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKAAKQSTDGRDAEIATLRTELENLKDEAAA AAEQLQEAESETKSLRTMTQRMILTQEEMEEVVLKRCWLARYWGLAVQHGICADVAVSKHEHWSALAPLPFEVVISAGQKAKEESDRGGRDSDRSKIVRD LSDLTGEGNIESMLSVEMGLRELASLKVEDAVVLALAQHRRPSTVRQTFSDSRPPGDPKFTEAIELSEAEADDVLFKEAWLTYYWRRALVHGVEEDIAED RLQFWISRSEQAPTSHDAVDGNLNALITKYSKNSSKQALIMCLFLFLYALFSYLWSKVSFAKTYLKNSPCGPLMTYLYPRMFFFSFCFNLIYNRTIDGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48860			unknown protein		Potri.015G104600 [exp]	0	1
AT1G54920			unknown protein		Potri.013G023600 [exp]	2.64	0.8600
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	3.87	0.8270
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	7.00	0.8256	CKI1.3
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	7.74	0.8259
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	10.95	0.7943
AT3G04490			unknown protein		Potri.019G019100 [exp]	11.13	0.8287
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	11.13	0.7815
AT5G58100			unknown protein		Potri.018G150600 [exp]	16.43	0.7647
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	17.26	0.8524
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	17.32	0.7816

Compare expression of checked genes

Potri.015G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.