Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23720 1095 / 0 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G23610 116 / 2e-29 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 88 / 9e-20 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 87 / 3e-17 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 60 / 2e-09 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105800 [exp] 1522 / 0 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.010G033000 [exp] 98 / 3e-23 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 89 / 1e-17 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 89 / 1e-17 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.006G040300 [exp] 57 / 2e-08 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.014G160500 [exp] 56 / 6e-08 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.016G035700 [exp] 55 / 1e-07 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.014G045500 [exp] 44 / 0.0004 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032545 [exp] 1185 / 0 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 1108 / 0 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10021940 [exp] 101 / 2e-24 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 92 / 2e-21 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 90 / 3e-20 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 84 / 2e-16 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 84 / 3e-16 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10003291 [exp] 83 / 5e-16 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10030324 [exp] 83 / 7e-16 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10000921 [exp] 60 / 2e-09 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain CL0016 [poplar] [flax] PKinase PF09192 [poplar] [flax] Act-Frag_cataly Actin-fragmin kinase, catalytic
Representative CDS sequence Show only first row Show all	>Potri.015G105000.1 pacid=42774922 polypeptide=Potri.015G105000.1.p locus=Potri.015G105000 ID=Potri.015G105000.1.v4.1 annot-version=v4.1 ATGATGTCAAAAGATGAAAAGGAAGCCTCTTTATCAGTCATCAACAACACAATCGAGGTCCAGGAGAAAGAGGAGGAGAGGGAACTGGACCTCGGATCCG AAGAGCTTGATCCTCCTTTACCTCTCACTGTTACCTCCCGGGTATTGTATATGTTGGGAGATATAACAGCAGGCCCAGCGTATAGGTTTGCTCAATGGCT GGAGTTGGTTCGTAAGAGAAGTGGCAAGTATCGTGCCTCAGGGTTCCCGCACCGGCCTTACAGGCTCGAAACTATGCCCTCTAGTCGGGGAGAATCTCTT GTTGATTCAAAAAGCCCACCTCCTGAGCAATCTCCAGAGATCAGTTTGTGGGACAGGCTTGGTAAAGCTGCTGCATTGGATATCGAGTTGAGCTCTTTTT CTTGGGACATGCTTTCTTCCCTTCACCACACTGAGCATAATAGTAGCAATGAAAATTCCGAGGATGAAATGAGCAAAGCCCTTGAAGTAACTGTAAATTC TGGGGGGGTTGTCTTCTTTGCCTTATTCAATCAACCTGGAAATGTTGACGCTTTTCATAAGGAAGCCGCAGCTGTCATAAAGTTTTCTTCTTCCAGGATG GCCACACAATCAGAACGTCTTGGCTATGAATTTGCAAAGTGGTTAGGAGTCCAAACTCCTCAGGCTAGAGTCATTCATAATTGCAGCCCAGAGTGGCTCC AGATCAAGGAAGCTGGAGAGAAAGCAAGAGTTGCAGCAGCTTTGGAAGGAGATGAAGTAGGTGAAGTGACATGTTCTGAGCTTTTGGAAGCTCTTGAACT TAGCCGATGCCTTATTCTGATGAGCTATGTTCATGGATCTCCTTTATTGGAGAGCTCAAATTCATTTGAGTCACGTGAAACTGCAGAAAGAATTGCAGCA GCAATTGGTAGGGTCTTCCTGTTGGACCTTGTCATCAGAAACGAAGATAGACTACCTTGCCGTGAGCTCAGATGGCGCGGAAATCCCGCAAATCTGTTGC TGGCTGAGAAAATGACCCCGTCAAATGTCAATGCCTTGGAGGATGCTTTTGACTCTGCAATTAACCGATACCGACCAAGGGTGATTAAAGCTCTACAGAA AGAAAGAAGGGCAACTTCAGTGGATTGCAGGCTTAACTCTCATAATCAAGGAGGACCAGGAATGGAATCACAGGGCTCAGATGTTTTTGATATCACAGAA GCTCCAAAGTCTAACAAAATGCTAAGAGTTCGAAAATCAGGAGAATCATCGTTTTCTGATCTCCTCATTTCTCATGCTGTGGCTATTGATTCTGGTGTTC CTCGTCGGCCTCCTGCTGGAAAACGCACAAATGACCAGGCAAATTATCCTAAATTGATTGAGTTGCTTATCAACAGTTCTGATTACTCCTCTAATTTGTT ATATGAAATAACTGGGGGGAAATTAGGAGCTCCTCCATTGGAAGGCACTGACTTCACTGATACACGAGTGACCGAAATGACTTCAGCTGTTCAGGAATTT CGTGGTGGGTTTCGTGCTGCTCTCAGGGATCTGCAAGGTTTCCATATATTCCTTCTCACTCTTCACCAAAAACTAGATAGCGTGTTACGAGTTTTTTTGA ACATCACAAATAAAACATCAGGGGACTGTGACAGAGATGATTTGGTGGTCCCTGAGTCACCTTCACATGTAGTTGTTCATTGTCCTTCTCCACCGAGTAA GGAACGGTTTCTTAATGATAACCATCCAGAGTTTAGTGATTCAGATTCGCAGCGAATTGCTCAAACTCCAAGGTCATCTTCAGGAAATAAAGAGTGCTCA GATTCTAGTTCTCCCATGTCAAGAGAAAGCTGGCATGGAAAGTTTTCCAAGGGGAGTGTAGAGCCCCTTCGTTGCCTGCGTCTGACAACAAAGCTCCGAG ACATTCATAAATTTGCCAAGGTGGATAATGAATCAAATAAAGAACTTGAACAATGGAATGAAATGCTGAGAAATGATGTTATCAAACTCTGTCAGGAGAA CAATTTCCAAACAGGGTTTTTTGAGGGCAGTGATAGTAACTGCGTTGTGGATGCATATGAGTTAAAGGTAAGATTAGAGCACATTCTTGAGAGGATATCA TTGATCTCCGAAGCTGCAAACACAGAGAAACCATCATCAATCACAAATAGCCTGTTTATTGGTGGCGCCCTGGCTGCAAGATCTGTGCACACTTTGCAAC ATCTAGGAATCACACATATTTTGTGTTTGTGTGGCAATGAAATTGGACAGTCAGAGTCGCAACACCCAGATCTATTTCAGTACAAAAATTTTTCTATAAC TGACGATGAGGATTCAAATATCAGCTGTATCTTTGAAGAAGCCTCTGATTTTATTGATCATGTTGAATCAGTAGGAGGGAGGGTTCTAGTTCATTGCTTT GAAGGGAGAAGTAGGAGTGCCACATTGGTTCTTGCTTATTTAATGCTCAGGAAGAAATTCACTCTACTAGAAGCATGGAATGCTCTAAGACAAGTTCATC GGCGAGCTCAGCCCAATGATGGTTTTGCAAGAATTTTACTGGATCTTGACCAGCGACTGCATGGGAAGGTTTCCATGGAATGGCAAAGGCGGAAGCCAGA AATGAAAGTCTGTCCCATCTGTGGGAAGAATGCTGGTCTGAGCAGCAGCTCGCTCAAGCTTCACTTGCAGAAAGCACACAAGAAGCTATCATCAGGCAGT GTGGACAGTGCAATGACCATGGAGATACAGAAGGCTCTGGATGCACTAAAAATGACCAGAAGCGGCAGCGTCAGCCCTACTTTGAGGCAGTCTTCACCAG CTATAGATGACTAG
AA sequence Show only first row Show all	>Potri.015G105000.1 pacid=42774922 polypeptide=Potri.015G105000.1.p locus=Potri.015G105000 ID=Potri.015G105000.1.v4.1 annot-version=v4.1 MMSKDEKEASLSVINNTIEVQEKEEERELDLGSEELDPPLPLTVTSRVLYMLGDITAGPAYRFAQWLELVRKRSGKYRASGFPHRPYRLETMPSSRGESL VDSKSPPPEQSPEISLWDRLGKAAALDIELSSFSWDMLSSLHHTEHNSSNENSEDEMSKALEVTVNSGGVVFFALFNQPGNVDAFHKEAAAVIKFSSSRM ATQSERLGYEFAKWLGVQTPQARVIHNCSPEWLQIKEAGEKARVAAALEGDEVGEVTCSELLEALELSRCLILMSYVHGSPLLESSNSFESRETAERIAA AIGRVFLLDLVIRNEDRLPCRELRWRGNPANLLLAEKMTPSNVNALEDAFDSAINRYRPRVIKALQKERRATSVDCRLNSHNQGGPGMESQGSDVFDITE APKSNKMLRVRKSGESSFSDLLISHAVAIDSGVPRRPPAGKRTNDQANYPKLIELLINSSDYSSNLLYEITGGKLGAPPLEGTDFTDTRVTEMTSAVQEF RGGFRAALRDLQGFHIFLLTLHQKLDSVLRVFLNITNKTSGDCDRDDLVVPESPSHVVVHCPSPPSKERFLNDNHPEFSDSDSQRIAQTPRSSSGNKECS DSSSPMSRESWHGKFSKGSVEPLRCLRLTTKLRDIHKFAKVDNESNKELEQWNEMLRNDVIKLCQENNFQTGFFEGSDSNCVVDAYELKVRLEHILERIS LISEAANTEKPSSITNSLFIGGALAARSVHTLQHLGITHILCLCGNEIGQSESQHPDLFQYKNFSITDDEDSNISCIFEEASDFIDHVESVGGRVLVHCF EGRSRSATLVLAYLMLRKKFTLLEAWNALRQVHRRAQPNDGFARILLDLDQRLHGKVSMEWQRRKPEMKVCPICGKNAGLSSSSLKLHLQKAHKKLSSGS VDSAMTMEIQKALDALKMTRSGSVSPTLRQSSPAIDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	0	1	Pt-PHS1.2
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	1.00	0.9106
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	3.74	0.8644
AT1G75720			Plant protein of unknown funct...		Potri.019G021000 [exp]	4.89	0.8637
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	6.00	0.8751
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	6.32	0.8944
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	6.70	0.8628
AT1G13570			F-box/RNI-like superfamily pro...		Potri.010G134200 [exp]	7.74	0.8587
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	8.06	0.8735
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	9.16	0.8683
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	11.57	0.8055

Compare expression of checked genes

Potri.015G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.