Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26744 323 / 1e-104 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G12860 289 / 7e-92 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65640 125 / 2e-31 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 111 / 8e-27 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 94 / 4e-20 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 81 / 5e-16 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G29930 70 / 1e-13 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G00870 72 / 4e-13 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 70 / 6e-13 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G32640 71 / 7e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106000 [exp] 818 / 0 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G108400 [exp] 136 / 2e-35 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.009G136300 [exp] 92 / 1e-19 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 81 / 8e-16 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 80 / 2e-15 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 79 / 2e-15 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 74 / 3e-15 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 78 / 5e-15 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 76 / 3e-14 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043199 [exp] 415 / 2e-139 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 394 / 5e-131 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10039631 [exp] 120 / 2e-30 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 113 / 7e-28 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10042572 [exp] 77 / 4e-16 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 75 / 2e-15 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018395 [exp] 76 / 5e-15 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005999 [exp] 78 / 6e-15 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10006951 [exp] 71 / 1e-13 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10004575 [exp] 73 / 3e-13 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G105200.1 pacid=42774847 polypeptide=Potri.015G105200.1.p locus=Potri.015G105200 ID=Potri.015G105200.1.v4.1 annot-version=v4.1 ATGCTTTCTAGACTAAATAGCACCAGTGTTTGGCTTGAAGATCATAAAGAAGAGCAAGATTCAACAACAAACCACCTCCACCACCACCACAACAACATTA ACAACACTACTGCAGCTGGTTGTGGTGGGGTCATGTTGGAGGGCAGGGAAGAAATGGGTTCTCTTTCTACTTTCAAATCCATGCTTGAAGTGGAAGATGA GTGGTATGTGAGTAACAACAACAATACTATTCATCAAACCCATCAAGACAGTATCAAAGACCTCACCTTTTCACCAGGTCTTGGTGACCCAGATAATCTT TTGCTTCACCAAGTGGATTCTTCCTCATCTTGTTCACCTTCCTCTTCAGTTTTCAACAACTTGGATCCTTCTCAGGTACATTACTTTATGCATCCAAAAC CGTCTTTGTCTTCACTCCTTAATGTGGTTTCTAACAACCCTTTAGAGCATGGGTTTGATTTGAGTGAAATTGGTTACCTTGAGAATCAAGGAACAAATTC AGCTGCAACCGCAAATGTTTCAGCTTTGTTAAACAGGGGAGGTGGGGTTTTGGGAAACTTGGGGAATTTCTCGGATTTGAGTTCAAATAGTCAGATTAGC ATTCCTAATTTATGTTCTGATCCACAATTTTCAAGTTCTCGGATGCTTCAGTTACCTGAAAATGGTCCTGGGTTAACTAGTTTTAGAGGGTTTGATGAGA ATTCAGGGAATCAATTGTTTTTAAACAGGTCTAAATTGTTAAGGCCTCTTGAAACTTACCCTTCAATGGGTGCGCAACCTACTTTGTTTCAAAAGAGAGC AGCTTTGAGGAAGAATTTGGGTGATAATGGAGGGAATTTGGGACTTTTGAGTGGGATTGATAGAGATAAAGGGAAGAGTGAAATGACTCAAATTAGTGAA GAGAATGACAAGAAGAGAAAATTTAGTAGCGGAGATGATTTTCTTGAGGATGTGAGCATTGATGGGTCGGGTTTGAATTATGATTCTGATGAATTTACTG AGAATACCAAGGTGGAGGAGATTGGTAAGAATGGCGGGATTAGTTCAAAAGCGAATAGTGGTGTTACTGGTGGTGTGGATCAAAAGGGGAAGAAGAAGGG GCTTCCAGCTAAGAATTTGATGGCAGAGAGGAGGCGCCGGAAGAAGCTCAATGATAGGCTGTACATGCTGAGGTCTGTTGTTCCAAAGATCAGCAAAATG GATAGGGCATCAATCCTTGGCGATGCAATTGAATACTTGAAGGAACTTCTGCAAAGGATTAATGATCTCCATAATGAATTGGAGTCGACTCCCCCCAGCT CGTCATTGACACCGACCACAAGTTTTCACCCTTTGACACCGACTCCATCAGCACTCCCCAGCCGTATCATGGATAAACTTTGCCCTAGCTCATTGCCAAG CCCAAATAGCCAGCCTGCAAGGGTTGAGGTTAGAGTGAGAGAAGGAAGGGCTGTAAACATCCACATGTTTTGTGGCCGCAAACCAGGTCTTTTGCTCTCC ACCATGAGAGCTTTGGATAACCTTGGGCTAGACATTCAGCAAGCTGTCATTAGCTGTTTCAATGGTTTTGCCATGGATATTTTCCGAGCTGAGCAATGCA AAGAAGGGCAGGACATGCATCCAGATCAAATTAAAGCAGTTCTCCTGGATTCAGCTGGCTTCCATGGCATGATGTAG
AA sequence Show only first row Show all	>Potri.015G105200.1 pacid=42774847 polypeptide=Potri.015G105200.1.p locus=Potri.015G105200 ID=Potri.015G105200.1.v4.1 annot-version=v4.1 MLSRLNSTSVWLEDHKEEQDSTTNHLHHHHNNINNTTAAGCGGVMLEGREEMGSLSTFKSMLEVEDEWYVSNNNNTIHQTHQDSIKDLTFSPGLGDPDNL LLHQVDSSSSCSPSSSVFNNLDPSQVHYFMHPKPSLSSLLNVVSNNPLEHGFDLSEIGYLENQGTNSAATANVSALLNRGGGVLGNLGNFSDLSSNSQIS IPNLCSDPQFSSSRMLQLPENGPGLTSFRGFDENSGNQLFLNRSKLLRPLETYPSMGAQPTLFQKRAALRKNLGDNGGNLGLLSGIDRDKGKSEMTQISE ENDKKRKFSSGDDFLEDVSIDGSGLNYDSDEFTENTKVEEIGKNGGISSKANSGVTGGVDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKM DRASILGDAIEYLKELLQRINDLHNELESTPPSSSLTPTTSFHPLTPTPSALPSRIMDKLCPSSLPSPNSQPARVEVRVREGRAVNIHMFCGRKPGLLLS TMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDMHPDQIKAVLLDSAGFHGMM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	0	1
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.010G170900 [exp]	1.73	0.8658
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	7.54	0.7661
					Potri.017G119700 [exp]	8.48	0.7633
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.015G080100 [exp]	14.69	0.7232
					Potri.016G004401 [exp]	15.19	0.7216
AT1G28100			unknown protein		Potri.003G163800 [exp]	17.66	0.7551
AT5G64480			unknown protein		Potri.009G080400 [exp]	19.89	0.7299
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	20.39	0.8223
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	21.00	0.7515
AT5G01090			Concanavalin A-like lectin fam...		Potri.016G107200 [exp]	28.28	0.7022

Compare expression of checked genes

Potri.015G105200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.