Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARF2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 1065 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 513 / 2e-172 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 464 / 8e-154 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 460 / 6e-152 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 458 / 1e-151 ARF ARF18 auxin response factor 18 (.1) AT5G60450 399 / 1e-126 ARF ARF4 auxin response factor 4 (.1) AT1G35540 390 / 2e-125 ARF ARF14 auxin response factor 14 (.1) AT1G34310 379 / 4e-121 ARF ARF12 auxin response factor 12 (.1) AT1G34410 377 / 1e-120 ARF ARF21 auxin response factor 21 (.1) AT1G30330 385 / 1e-119 ARF ARF6 auxin response factor 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106100 [exp] 1451 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 746 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 726 / 0 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 521 / 3e-175 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 518 / 4e-174 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.014G100100 [exp] 495 / 9e-165 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 488 / 8e-162 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 479 / 2e-158 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 473 / 2e-156 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043200 [exp] 1122 / 0 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 1122 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 519 / 4e-174 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 511 / 5e-171 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 494 / 1e-164 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 434 / 2e-146 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10033598 [exp] 381 / 1e-119 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 376 / 6e-119 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10012421 [exp] 380 / 5e-118 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 373 / 5e-118 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.015G105300.3 pacid=42776631 polypeptide=Potri.015G105300.3.p locus=Potri.015G105300 ID=Potri.015G105300.3.v4.1 annot-version=v4.1 ATGGCTTCTTCAGAGATTTCAGCGAAAGCTAACAGTGGAAACATTAGAGGAGGAGGAGAGAGCTTCACTTCTGGTTACAGTGAAGCCATGGAAGGGCAGA AAAATCATTCTACTCATCCAAGTTCAGCTAGAGTTGTAGATGCTGAAACGGCGCTGTATAATGAGCTATGGCATGCTTGTGCTGGTCCTTTAGTGACTGT ACCTCGTGAAGGAGATCGTGTGTTTTATTTCCCTCAAGGACATATAGAGCAGGTGGAGGCATCAACGAATCAGGTAGCAGACCAGCAGATGCCGCTGTAT AATCTTCTACCGAAGATCTTATGTCGTGTGGTTAATGTTCAGTTGAAGGCTGAACCAGATACTGATGAGGTGTTTGCGCAAGTGACTCTGCTTCCTGAGC ACAACCAAGATGAGAGTGTGTTGGAGAAGGAGCCTCCTCCACCTCCACCACCGCGATTTCATGTACATTCATTTTGTAAAACCCTGACTGCTTCGGATAC CAGTACTCATGGTGGATTTTCGGTTCTTAGAAGACATGCAGATGAATGTCTTCCACCTTTGGATATGTCAAGGCAGCCTCCAACACAGGAATTGGTTGCC AAGGATTTGCATGGAAATGAATGGCGTTTCCGACACATTTTTCGGGGCCAACCACGGAGGCACTTGCTTCAGAGTGGATGGAGCGTGTTTGTTAGCTCCA AAAGGCTTGTTGCGGGTGATGCGTTTATATTTCTAAGAGGTGAGAATGGAGAACTTCGAGTTGGTGTTAGACGTGCAATGAGACAGCAGGGTAATGTTCC ATCATCTGTCATATCCAGCCACAGCATGCATCTTGGGGTGCTTGCTACAGCATGGCATGCTGTTTCAACGGGGACCCTGTTCACTGTTTATTACAAGCCA AGGACAAGTCCTGCAGAGTTCATTGTCCCCTTTGATCAATACATGGAGTCTGTCAAGAATAATTATTCCATAGGGATGAGGTTTAAAATGAGATTTGAAG GAGAAGAAGCTCCTGAGCAAAGATTTACTGGCACTATTGTTGGAATTGAAGATGCCGATCCCGGGAGGTGGAAGAATTCTAAATGGAGGTGCCTTAAGGT GAGATGGGATGAAACTTCTACCATGCCTCGGCCAGAGAGAGTTTCACCATGGAAAATTGAGCCTGCTCTAGCACCTCCTGCACTAAATCCTCTTCCATTG CCCAGGCCTAAAAGGCCTCGAGCAAACATGGTGCCCTCATCCCCTGACTCCTCAGTTCTTACTAGAGATGGTTCATTCAAAGTAACTGCAGACCCTCCAT CAGCAAGTGGATTTTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCACTTTTACAGAGAGCAATGAGTCCAATGCTGCTGAAAAGTCTGT TATGTGGCCATCCTCAGCAGATGATGAGAAGATCGATGTGTTATCTACTTCAAGAAGATTTGGATCAGAGAGGTGGATGTCCTCTGCGAGGCATGAACCA ACCTGCACAGATTTGCTATCTGGCTTTGGGACAAATTCTGATTCATTCCATGGGTTTGGTGCCCCGTTTGTTGACCAAACTGCCGTGGCTGCTAATCCAA CGAAGAAACACTTGTCAGATCAAGGGCAGTTTAACTTGCTTGCCAGCCCGTGGTCCATAATGTCCTCGGGTCTCTTGCTAAAGTTGTCAGAGTCAAATAC AAAGGTTCCAGTACAAGGCAGCGATGTAACATATCAAGCACGGGCAAATGTGTTTAGTGAGTATCCTGTGCTTCAAGGTCATAGAGTTGAGCAGTCGCAT AAAAACTGGATGATGCATCCCCCGCCATCTCATTTTGATAATCATGCTAATTCGAGAGAGTTAATGCCCAAACCTGTTTTGATGCAAGAACATGATTCTG GAAAATCCCTGGAAGGAAACTGCAAGCTCTTTGGGATTCCTTTGAAAATTAGTAAACCTGTTGCACCAGAGGCAGCAGGGACCACAATCACGATGAACGA ACCACTGAGTCATATCCAACCTGTGAGTCACCAACTTACATTTGAATCTGATCAGAAGTCAGAACAATCCAAAGGTTCGAAGATGACTGATGAAAATGAA AACGAGAAACCATTCCAAGCTGGTCATTTGCGAACAAAGGACAACCATGGAAAAGCACAAAATGGCTCAACCAGGAGTTGTACGAAGGTTCACAAGCAGG GGATTGCACTTGGTAGGTCTGTTGATCTTGCCAAGTTCAATAACTATGATGAGTTGATTGCTGAATTGGACAGGCTGTTTGAATTTAATGGTGAATTAAT GGCTCCCCAAAAGAATTGGCTGATTGTGTACACAGACGATGAGGATGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAATTTGTTGGCATGGTTAGG AAGATAGTTATTTACACCAAAGAGGAGGCACAGAAGATTAAACCAGGCGCCTTGAATTCAAAGGGCGTTGAGAATCCAATGGATATGGAGGGTGAGGATG ATGCCAAGGAAGCCAAACATCTGCCACTTCCTTCAGCATGTAGCCCTATGAATTGTTAG
AA sequence Show only first row Show all	>Potri.015G105300.3 pacid=42776631 polypeptide=Potri.015G105300.3.p locus=Potri.015G105300 ID=Potri.015G105300.3.v4.1 annot-version=v4.1 MASSEISAKANSGNIRGGGESFTSGYSEAMEGQKNHSTHPSSARVVDAETALYNELWHACAGPLVTVPREGDRVFYFPQGHIEQVEASTNQVADQQMPLY NLLPKILCRVVNVQLKAEPDTDEVFAQVTLLPEHNQDESVLEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVA KDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTLFTVYYKP RTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERVSPWKIEPALAPPALNPLPL PRPKRPRANMVPSSPDSSVLTRDGSFKVTADPPSASGFSRVLQGQEFSTLRGTFTESNESNAAEKSVMWPSSADDEKIDVLSTSRRFGSERWMSSARHEP TCTDLLSGFGTNSDSFHGFGAPFVDQTAVAANPTKKHLSDQGQFNLLASPWSIMSSGLLLKLSESNTKVPVQGSDVTYQARANVFSEYPVLQGHRVEQSH KNWMMHPPPSHFDNHANSRELMPKPVLMQEHDSGKSLEGNCKLFGIPLKISKPVAPEAAGTTITMNEPLSHIQPVSHQLTFESDQKSEQSKGSKMTDENE NEKPFQAGHLRTKDNHGKAQNGSTRSCTKVHKQGIALGRSVDLAKFNNYDELIAELDRLFEFNGELMAPQKNWLIVYTDDEDDMMLVGDDPWQEFVGMVR KIVIYTKEEAQKIKPGALNSKGVENPMDMEGEDDAKEAKHLPLPSACSPMNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	0	1	Pt-ARF2.1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	1.73	0.8200	Pt-ARF2.2
AT1G75810			unknown protein		Potri.002G020200 [exp]	5.65	0.7547
AT4G00990			Transcription factor jumonji (...		Potri.015G012800 [exp]	6.48	0.7802
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	8.77	0.7257
AT3G14830			unknown protein		Potri.003G026500 [exp]	11.40	0.7268
AT2G21180			unknown protein		Potri.009G129200 [exp]	11.48	0.6745
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	11.48	0.7243
AT4G27290			S-locus lectin protein kinase ...		Potri.001G418100 [exp]	13.96	0.7149
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.010G096800 [exp]	16.79	0.6677
AT1G33055			unknown protein		Potri.001G452500 [exp]	17.86	0.6923

Compare expression of checked genes

Potri.015G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.