Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61990 773 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 383 / 2e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 347 / 1e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 336 / 7e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 332 / 6e-100 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 338 / 5e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 327 / 2e-97 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 328 / 5e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G54980 323 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 314 / 9e-95 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 402 / 3e-124 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 377 / 9e-115 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 367 / 2e-109 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 351 / 8e-108 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 350 / 6e-106 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G249800 [exp] 350 / 8e-106 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G276500 [exp] 340 / 4e-103 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 340 / 4e-102 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 343 / 2e-101 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036020 [exp] 907 / 0 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 528 / 2e-177 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 365 / 3e-111 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 367 / 8e-111 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016729 [exp] 340 / 5e-107 AT5G39710 243 / 4e-73 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 352 / 1e-105 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 351 / 2e-105 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 337 / 7e-102 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 345 / 9e-102 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 333 / 6e-100 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G105400.3 pacid=42774882 polypeptide=Potri.015G105400.3.p locus=Potri.015G105400 ID=Potri.015G105400.3.v4.1 annot-version=v4.1 ATGGGTCTAATCTGTCATAAGAGGAACCTCAATTTCTTAAAAATCACAGCAACCTTAAAAGCAAGAACCCAAAATCGTAAAGCCAACAACTTTTGCTCCA AAACCCAAAACAACAGCAACATAGTCAATGAAATCACAACGTTTCTCAACCAAAAAAATTGGGAGTCTTTATTACCTTTGGTGTCGAATAAGCTGAGCCC AGATGTTGTTCACTCAGTTATTACAAAACAGGTAAATGATCCTAAACGTTTGTTAGATTTCTTCAACTGGGTTCAGTTTCAAATGGGTTTCTCTCAAAAG TTACAATCTTTTTCGATTCTTGCATTAATTTTATGCAATTCAAGGCTCTTTTCTAGGGCTGATAGTGTTGTAAATCAAATGATAATGATGTCTAGTGGTG GATATTCAGAGATTTTGGATTCATTAATTAAGTCTTGTAAAGAGTTTGATTTGAATAATGTTAATGGTAATGAAAATAGTAATAACAATGATCGTGGGGT AGTTTTTGAGTTGTTGATTGATGGGTATAAAAAGAAAGGGCTTTTTGATGAGGCTGTTAGTTTTTTTTTGGGCGCGAAAAGGAATGGTTTTGTTGTTGGC TTGTTGTGTTGCAATGGGTTGTTGAGTGATTTGCTGAAAGCTAACAAATTGGAGTTGTTTTGGAGATTTTATAATGGGATGTTAGAGGCTAACGTGTTGC ATGATGTCTATACTTATACCCATTTAATAAATGCACATTTTAGAGCAGGGAATGCTAAGGAGGGTAAACGCTTGCTTTTTGAAATGGAAGAGAAGGGCTG TAGTCCTAGTTTGGTTACTTACAATGTGGTGATTGGTGGGTTGTGTAGAGCTGGGGAGGTTGATGAAGCGTTTGAGTTGAAGAAGTTGATGGACAAGAAG GGTTTGGTCGCGGATGTTTTTACTTATAGTATACTTATTGATGGGTTTGGTAAACAGAAGAGATGTACTGAGGCGAAGTTGATGTTGGAAGAGATGTTTA GCAAGGGTTTAAAACCTGGCCACGTTGCCTACACTGCTTTGATTGATGGGTTCATGAGACAAGGTGACAGCGGAGAAGCATTTCTGGTCAAGGAGGAGAT GCTTGCTCGTGGAGTTAAATTGAATCTTTTTACATACAATGCTCTTGTTAAAGGGGTGTGTAAGTTTGGTGATATGGAGAAGGCAGATGCTCTTTTAAAT GAAATGATTATGGTGGGGATAAAACCTGATACCCAGACTTATAATAATATGATTGAGGGATATTTGAAGGAACAGAATACATCACGGGTTAAAGATTTAT TGTCTGAGATGAAGAAGAGTAACTTGGTGCCCACTGCATACACTTGCGGCATGATAATCAATGGTCTATGTCGCCATGGATCTATTGAAGATGCCAGTAG AGTGTTTGAGATTATGGTTTCTCTGGGTGTGAAACCGAATGCTGTAATCTACACAACTTTAATAAAAGGTCATGTTCAGGAAGGGAGATTTCAAGAGGCA GTGAGAATTTTAAAGGTAATGGATAAGAAAGGGGTTCAGCCTGATGTATTATGCTATAATTCTGTAATCATTGGCCTCTGCAAGTCTAGAAAAATGGAAG AAGCAAAGGATTATTTGGTTGAAATGATTGAGAGGGGACTTAAGCCAAATGTGTATACTTATGGGGCTTTAATACATGGATATTGCAAGTCAGGGGAAAT GCAAGTAGCTGACAGGTACTTCAAGGAGATGCTAGGTTGTGGTATAGCACCAAATGATGTTGTTTGCACAGCCCTGATCGACGGGTACTGCAAGGAGGGT AGCACTACAGAAGCCACTTCAATTTTTAGATGTATGCTAGGACGGTCAGTGCACCCTGATGTGCGGACTTACAGTGCCCTCATCCATGGTCTCTTGAGGA ATGGGAAGCTTCAAGGAGCAATGGAGCTGCTATCCGAATTTCTTGAAAAGGGATTGGTGCCTGATGTCTTTACCTACAACTCTATCATATCTGGCTTTTG CAAGCAAGGTGGTATAGGGAAGGCTTTTCAACTTCATGAATACATGTGCCAAAAAGGCATCAGTCCTAACATCATCACTTACAATGCTTTGATCAATGGA CTTTGCAAGGCAGGCGAGATAGAAAGAGCCCGGGAGCTGTTTGATGGAATTCCAGGAAAGGGTTTGGCTCATAATGCTGTGACCTATGCGACTATCATAG ATGGGTATTGCAAATCTGGAAATCTAAGCAAGGCATTTCGGTTATTTGATGAGATGACATTGAAGGGGGTCCCACCTGATAGCTTTGTCTACAGTGCCCT CATTGATGGATGTCGCAAAGAAGGAAATACTGAAAAGGCCCTGTCCCTATTCTTAGAATCAGTGCAGAAGGGCTTTGCTTCCACTTCTTCTCTCAATGCT TTGATGGATGGGTTCTGCAAGTCTGGGAAGGTGATTGAAGCTAATCAGTTGTTGGAAGACATGGTCGATAAGCATGTCAAACCAGATCACGTGACCTACA CAATTCTGATTGATTATCATTGCAAGACAGGTTTTTTGAAGGAAGCAGAGCAGTTCTTTGTTGATATGCAAAAGAGGAATCTGATGCCAAATGCTTTAAC TTATACAGCACTTTTAAGTGGTTACAACATGGCGGGGCGCAGATCTGAGATGTTTGCTCTTTTTGATGAAATGATTGCAAAAGATATTGAACCTGATGGT GTTACCTGGAGTGTAATGATTGATGCTCATCTCAAAGAAGGTGACCATGTGAAAACTTTGAAGCTGGTGGATGACATGTTGAAGAAGGGTGGTAATGTGA GCAAAAACGTGTGTCATGTGCTAATTGATCCATTGTGCAGAAAGGAACATGTTTCTGAAGTGCTGAAGGTACTTGAGAAAATAGAAGAGCAAGGATTAAA TCTCAGTCTCGCTACTTGCAGCACTCTAGTACGCTGTTTTCACAAAGCAGGCAAAATGGACGGTGCAGCGAGGGTCTTAAAGAGCATGGTCAGATTCAAA TGGGTTCCAGACTCCACTGAATTAAATGACTTAATCAATGTGGAACAAGACAGTACAGACTCTGAGAATGCTGGTGATTTCTTAAAGCAAATGGCATGGG AAGTTGCTTGCCAGGTGCGGGCCTGA
AA sequence Show only first row Show all	>Potri.015G105400.3 pacid=42774882 polypeptide=Potri.015G105400.3.p locus=Potri.015G105400 ID=Potri.015G105400.3.v4.1 annot-version=v4.1 MGLICHKRNLNFLKITATLKARTQNRKANNFCSKTQNNSNIVNEITTFLNQKNWESLLPLVSNKLSPDVVHSVITKQVNDPKRLLDFFNWVQFQMGFSQK LQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVG LLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKK GLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFLVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLN EMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEA VRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEG STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALING LCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNA LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDG VTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFK WVPDSTELNDLINVEQDSTDSENAGDFLKQMAWEVACQVRA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	0	1
AT5G22450			unknown protein		Potri.008G020600 [exp]	1.73	0.8986
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	2.00	0.9249
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	2.82	0.8978
AT3G45830			unknown protein		Potri.009G026100 [exp]	3.46	0.9154
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	4.47	0.8964
AT3G45830			unknown protein		Potri.001G233800 [exp]	8.36	0.8934
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	11.48	0.8831
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	11.83	0.8889
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	12.36	0.8899
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	12.96	0.8925	Pt-RPB1.1

Compare expression of checked genes

Potri.015G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.