Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61980 1109 / 0 AGD1 ARF-GAP domain 1 (.1) AT5G13300 1043 / 0 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G10870 645 / 0 AGD4 ARF-GAP domain 4 (.1) AT1G60860 635 / 0 AGD2 ARF-GAP domain 2 (.1) AT3G17660 100 / 2e-23 AGD15 ARF-GAP domain 15 (.1) AT5G54310 102 / 1e-22 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G07940 95 / 1e-20 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G21160 93 / 3e-20 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 93 / 3e-20 AGD13 ARF-GAP domain 13 (.1) AT4G17890 74 / 7e-14 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163200 [exp] 1083 / 0 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.001G066800 [exp] 1074 / 0 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.011G127000 [exp] 108 / 1e-24 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 108 / 2e-24 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 100 / 1e-23 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 103 / 4e-23 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 102 / 1e-22 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 91 / 2e-19 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 89 / 5e-19 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016724 [exp] 1134 / 0 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 1073 / 0 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10001799 [exp] 1001 / 0 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 971 / 0 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10030568 [exp] 627 / 0 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10030921 [exp] 332 / 4e-102 AT1G60860 608 / 0.0 ARF-GAP domain 2 (.1) Lus10027249 [exp] 100 / 2e-23 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 103 / 8e-23 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 97 / 8e-21 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 96 / 2e-20 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0266 [poplar] [flax] PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf CL0145 [poplar] [flax] Golgi-transport PF03114 [poplar] [flax] BAR BAR domain CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.015G105500.1 pacid=42775579 polypeptide=Potri.015G105500.1.p locus=Potri.015G105500 ID=Potri.015G105500.1.v4.1 annot-version=v4.1 ATGCAGTTCTCTAAACTTGACGATTCGCCGATGTTTCGGCAACAGATGCAATGCATGGAAGAAAGCGCGGAGGCATTACGAGGGAGGTGTTTGAAGTTCT ACAAAGGATGTCGAAAGTACACAGAAGGGCTTGGAGAAGGATATGATGGGGATATTGCTTTTGCGAGTGCGCTTGAAGCTTTTGGAGGAGGACATAATGA TCCTATTTGTGTTGCTTTTGGAGGTCCTGTTATGAACAAATTCACAATCACGTTGAGAGAAATTGGTACATACAAGGAAGTTCTTCGGTCACAGGTGGAG CACATGCTAAATGATAAGTTGCAGCACTTTGTTAATTTTGATCTACAAGACATCAAGGAAGCACGGAAACGTTTTGACAAGGCTTCCGTGATGTATGATC AGGCGCGTGATAAGTTTCTTTCACTGAGGAAGAGTACTAGGATGGATGTAACTTCTGCTATACAGGAGGAACTGCACAATGCAAGATCCTCTTTTGAGCA AGCACGCTTTAATTTGATTAGTGCTCTTTCTGTTGTCGAGGCCAAGAGGAGATTTGAGTTTCTGGAGGCTGTTAGTGGAACAATGGATGCTCATCTTCGA TTCTTCAAGCAGGGATATGAGCTATTGCACCAGATGGAGCCTTTCATTAACCAGGTCTTGGCTTATGCACAACAATGTAGAGAATGTTCCAACTATGATC AAGTATCCCTTCATGAAAGGATGCAAGAGTTCATGAAGCATATTGATCAAGAAAGTAGGCATTCTGTAAATGACATTTTCAGTTCTCCTCGTGAAGATAG CGTGCGACCTGCTGCTAGGAGTTCACAAAAAGTGATAGAGGAGGTTATGCAATCTGCTGCTAAGGGGAAGGTTCAAACCATTCGACAAGGATATCTATCA AAGCGTTCCTCAAATTTGAGAGGTGATTGGAAAAGAAGGTTTTTTGTTCTTGATAATCGAGGGATGCTTTACTACTATCGCAAGCCATTCAACTGGTCAT CCTCAGGTGGGAGTCAATCCGCGGTACAGAGAAATGGTTCTTCTGAAAATGGTCAAGGATTGTTGAGTCGGTGGCTTTCTTCTCACTACCATGGTGGTGT GCATGATGAAAAATCTGTTGCTCGTCACACTGTGAACCTTCTAACATCAACAATAAAGGTTGATGCAGATCAATCAGATTTAAGATTCTGCTTCAGAATT ATTTCACCAATGAAAGTCTACACTTTGCAGGCAGAGAATGCATTAGACCAAATGGACTGGATTGAAAAGATAAATGGGGTGATCACTTCGTTATTGAGTT CCCAGATAACCGAAAGATTTCTTTCTTCTAGTCCGATGGGAAGTGGTGACCATCACTCTGTTAGTGAGAGTGGCTCGTTCATAGATTCTCCTGATCAGAC AGAGATTGAGGAGTTCACGTTTGATACTGGAAGTCATTTACATCCAACCAGAAGTTTGCGACGACAAGATTACACCATAAAAATTGAAAAGCCAATTGAT ATGTTGAGAAGAGTACCTGGGAATGACAGATGTGCTGATTGTGGTGCACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATTCTTATATGCATTGAAT GTTCTGGTGTTCATCGTAATCTTGGGGTACATATATCAAAGGTAAGATCACTAACACTTGATGTAAAAGTGTGGGATCCATCTATCTTAAACTTGTTTCA GTCACTGGGGAATTATTGTGCAAACACAATTTGGGAGGAGTTGTTGCATCCAACAAGTTCTACTTCTGATGAAGCACTCAGATTTTCTAAATCTGATAGA CACAAGCAGTTCCGCCCAAGGAAACCCAATCAAGATGATCCTATATCAGTGAAGGAGCAGTTTATTCATGCGAAGTATGCACAAAAAGTTTTTGTATTCA AGTCAAGGGACAATCAACATCCAGTGGTGCAACAGATGTGGGAAAGCATCCATGCTAATGACAAGAAAGGAGTTTACCGCCATATTGTCTGCTCTGGGAT AGATGTCAATGCTATCCATGGACAAGCATCATTTAGTGATTCTTTGAACAAGCTATCAGCAAGCTATCTGACGTCATTAAATAGAAGTGAGGACCAGCTC ATAGAGGAAATTTCTGATGGATGCCCTTTGCTTCACCTTGCCTGCCTAACAGCTGACAATGGCATGGTAGAACTACTCCTACAATATGGTGCAAATATAA ATGCTTCTGATTCAAAAGGTCATACAGCACTGCACTATTGCATTATCAGCAAGAGATATCCTATTGCAAAATTGCTTCTTAGGAGGGGGGCCAATCCACG AGCTGTGAATGGCGAAGGTAAAACAGCATTACAGCTTGCACCAGGATCATCCATTGATGACGGCGAGCTTGTTATTCTGTTAACAGGCAAACTCTTTACC GAAAGACGGTGA
AA sequence Show only first row Show all	>Potri.015G105500.1 pacid=42775579 polypeptide=Potri.015G105500.1.p locus=Potri.015G105500 ID=Potri.015G105500.1.v4.1 annot-version=v4.1 MQFSKLDDSPMFRQQMQCMEESAEALRGRCLKFYKGCRKYTEGLGEGYDGDIAFASALEAFGGGHNDPICVAFGGPVMNKFTITLREIGTYKEVLRSQVE HMLNDKLQHFVNFDLQDIKEARKRFDKASVMYDQARDKFLSLRKSTRMDVTSAIQEELHNARSSFEQARFNLISALSVVEAKRRFEFLEAVSGTMDAHLR FFKQGYELLHQMEPFINQVLAYAQQCRECSNYDQVSLHERMQEFMKHIDQESRHSVNDIFSSPREDSVRPAARSSQKVIEEVMQSAAKGKVQTIRQGYLS KRSSNLRGDWKRRFFVLDNRGMLYYYRKPFNWSSSGGSQSAVQRNGSSENGQGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRI ISPMKVYTLQAENALDQMDWIEKINGVITSLLSSQITERFLSSSPMGSGDHHSVSESGSFIDSPDQTEIEEFTFDTGSHLHPTRSLRRQDYTIKIEKPID MLRRVPGNDRCADCGAPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSILNLFQSLGNYCANTIWEELLHPTSSTSDEALRFSKSDR HKQFRPRKPNQDDPISVKEQFIHAKYAQKVFVFKSRDNQHPVVQQMWESIHANDKKGVYRHIVCSGIDVNAIHGQASFSDSLNKLSASYLTSLNRSEDQL IEEISDGCPLLHLACLTADNGMVELLLQYGANINASDSKGHTALHYCIISKRYPIAKLLLRRGANPRAVNGEGKTALQLAPGSSIDDGELVILLTGKLFT ERR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	0	1
AT3G16300			Uncharacterised protein family...		Potri.001G188000 [exp]	4.89	0.7040
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	5.74	0.7229
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	7.21	0.7278
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	7.68	0.7310
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	9.16	0.6700
					Potri.005G098650 [exp]	10.09	0.6886
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	11.18	0.6394
AT3G08880			unknown protein		Potri.016G122350 [exp]	12.00	0.6770
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	12.40	0.6592	AGO903,AGO4.1
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	12.96	0.6870

Compare expression of checked genes

Potri.015G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.