Plant FIBer expression Database

Potri.015G105600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61970 915 / 0 signal recognition particle-related / SRP-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106200
[exp]
1081 / 0 AT5G61970 904 / 0.0 signal recognition particle-related / SRP-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032538
[exp]
514 / 2e-180 AT5G61970 487 / 5e-170 signal recognition particle-related / SRP-related (.1)
Lus10043202
[exp]
504 / 7e-174 AT5G61970 468 / 6e-160 signal recognition particle-related / SRP-related (.1)
Lus10040614
[exp]
351 / 2e-116 AT5G61970 345 / 3e-114 signal recognition particle-related / SRP-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF16969 SRP68 RNA-binding signal recognition particle 68
Representative CDS sequence
>Potri.015G105600.2 pacid=42774751 polypeptide=Potri.015G105600.2.p locus=Potri.015G105600 ID=Potri.015G105600.2.v4.1 annot-version=v4.1
ATGGGGAAAGAGAATGAAGCGATCGCAATGGAAGTCGACGGTCCGAAATCCAATAATTCTGATCAGATCAATCCGAGATACTCAATCAACGTTTTGCAAT
TGCTGAAATCTGCGCAAATGCAGCATGGATTGAGGCATGGGGATTATGCTCGTTATCGGAGGTATTGTACTGCACGGTTAAGGAGGTTATATAAATCGTT
GAAGTTTACTCATGGCCGCGGTAAATATACGCGTAGAGCTATAAATGAGTCCACTGTTACGGAAGTGAGGTATCTGCATATGGTTCTTTATACGGCAGAG
AGAGCATGGAGCCATGCTATGGAGAAAAGACAGCTTCTAGATGGCCCAAATGCCAAGCAACGTATTTATTTGATTGGGAGACTGAGGAAGGCAGTAAAAT
GGGCTGATTTATTTTCAGGATTATGTGCTGCCAAGGGAGATTCCAGAACATCTTTGGAAGCGGAGGCCTATGCATCATATATGAATGGGCTTCTGTTGTT
TGAACAAGATCGGAATTGGGACACTGCGTTGAAGAATTTCATAAGTTCCAGAGCGGTTTATGAGGAACTGGGGAAATATGGAGATTTAGAGAATCAAGTT
TTGTGCCGTGAGCGCGTTGAGGAGCTGGAACCTAGTATTAGATACTGCAGGCACAAAATCGGCGAGTCAAATCTGAAAACTTCGGAGCTCTTACAAATTG
GTGAGATGGAAGGTCCTGCGCTAGACCTTTTCAAAGCAAAATTGGAGGCTGCTATGGCTGAAGCAAGATCTCAACAGGCTGCATCCCTGACAGAGTTTCA
TTGGCTTGGTCACAGATTTCCAATTTCAAATGCAAAAACTCGGGTTGCCATTTTAAAAGCACAAGAATTGGAGAAGGATTTGCATGGTCCTACAGCAGAT
TCAATCCCAGCTGAGAAAAAATTAGCTGTCTTTGACAAAATTTTCACGGCATATCACGAGGCTAGGAGCTTCATTCGCAGTGACTTGGTCAGTGCTGGTA
ATGCTGACAGTGTCAAAGATGAATTAAATGGGCTTGATAAAGCTGTTAGTGCTGTACTAGGACAGCGTACCATTGAGCGTAACCAGTTGTTGGTTAGCAT
TGCCAAGAGTAAACTTACCCGGCGCAGAGATGACAAAAATGAGAAAGTTACCAAGCCAGAAGAGCTTGTTCGCTTGTATGATCTTTTATTACAGAATACA
GCTGACCTTTCTGATTTAGTTAGTTCTGGAAGAGACCGAAAACCTGAAGAAGTAGAATTCACTGAAGACTGTGATCTTCGAAGTACGGCTTTCCGAGCAC
AAAGGTGCTTCTACTTGGCAAAATCATATAGTTCAGCTGGAAAGCGAGCAGAAGCATATGTATTATACTGCCATGCTCGATCCCTTGCTGAGAATGCCCT
AAAGAAATTCCAAACTGTGACGAGCACTGATGAGGTAACGATCAAAGAGTTGAGAACACTAAACAACGAGTGCAGAGCTAACAGTTGCATAGAGCATGCT
ACTGGGATCATGGAGCATGAGAAGGTTTCGGAGAATCTTTCAAAGAAAGTTTCCACGATATCACTCAGCGGAGTGGACAAGAAGGTGGAGAAATTCCTCC
TTGAGAAACTTGATGTCTACGAGTCAGCAGTTGGGGAACCAAATGTCAAGAGTGTTCCGCGCATCGAAGTCTTCCCTCCAGCTTTCCAATCAATACCTCG
AAATCCTATTGTTCTAGACCTTGCCTATAACTGCATTGATTTCCCATCTCTAGAAAACAGGATGAAGAAGGACAAGAAGGGCTTCATAAGTAGGCTCTGG
CGATGA
AA sequence
>Potri.015G105600.2 pacid=42774751 polypeptide=Potri.015G105600.2.p locus=Potri.015G105600 ID=Potri.015G105600.2.v4.1 annot-version=v4.1
MGKENEAIAMEVDGPKSNNSDQINPRYSINVLQLLKSAQMQHGLRHGDYARYRRYCTARLRRLYKSLKFTHGRGKYTRRAINESTVTEVRYLHMVLYTAE
RAWSHAMEKRQLLDGPNAKQRIYLIGRLRKAVKWADLFSGLCAAKGDSRTSLEAEAYASYMNGLLLFEQDRNWDTALKNFISSRAVYEELGKYGDLENQV
LCRERVEELEPSIRYCRHKIGESNLKTSELLQIGEMEGPALDLFKAKLEAAMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHGPTAD
SIPAEKKLAVFDKIFTAYHEARSFIRSDLVSAGNADSVKDELNGLDKAVSAVLGQRTIERNQLLVSIAKSKLTRRRDDKNEKVTKPEELVRLYDLLLQNT
ADLSDLVSSGRDRKPEEVEFTEDCDLRSTAFRAQRCFYLAKSYSSAGKRAEAYVLYCHARSLAENALKKFQTVTSTDEVTIKELRTLNNECRANSCIEHA
TGIMEHEKVSENLSKKVSTISLSGVDKKVEKFLLEKLDVYESAVGEPNVKSVPRIEVFPPAFQSIPRNPIVLDLAYNCIDFPSLENRMKKDKKGFISRLW
R

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61970 signal recognition particle-re... Potri.015G105600
[exp]
0 1
AT1G23170 Protein of unknown function DU... Potri.008G131800
[exp]
2.82 0.8977
AT2G13560 NAD-ME1 NAD-dependent malic enzyme 1 (... Potri.002G135300
[exp]
3.60 0.9018
AT2G19160 Core-2/I-branching beta-1,6-N-... Potri.006G076600
[exp]
8.36 0.8335
AT3G11130 Clathrin, heavy chain (.1) Potri.010G186900
[exp]
8.66 0.8764
AT5G08580 Calcium-binding EF hand family... Potri.005G087600
[exp]
11.22 0.8741
AT1G26850 S-adenosyl-L-methionine-depend... Potri.010G094100
[exp]
14.38 0.8857
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.013G082200
[exp]
16.73 0.8470 CESA3.1
AT1G62020 Coatomer, alpha subunit (.1) Potri.012G074800
[exp]
16.91 0.8387
AT2G34970 Trimeric LpxA-like enzyme (.1) Potri.005G045200
[exp]
21.97 0.8395
AT3G27325 hydrolases, acting on ester bo... Potri.001G338000
[exp]
22.53 0.8767

Potri.015G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.