Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33550 186 / 1e-56 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 66 / 4e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G35640 63 / 5e-11 Trihelix Homeodomain-like superfamily protein (.1) AT1G31310 56 / 1e-08 Trihelix hydroxyproline-rich glycoprotein family protein (.1) AT5G51800 52 / 3e-07 Trihelix Protein kinase superfamily protein (.1) AT3G10000 42 / 0.0004 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G13450 42 / 0.0004 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 42 / 0.0005 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066900 [exp] 247 / 1e-79 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 245 / 4e-79 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.012G106650 [exp] 81 / 7e-19 AT2G33550 65 / 8e-14 Homeodomain-like superfamily protein (.1) Potri.012G117500 [exp] 65 / 2e-11 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.018G002801 [exp] 62 / 1e-10 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.006G279100 [exp] 59 / 2e-09 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.012G132300 [exp] 45 / 6e-05 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1) Potri.010G055000 [exp] 42 / 0.0004 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.008G025600 [exp] 42 / 0.0005 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020182 [exp] 66 / 2e-11 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10026986 [exp] 64 / 6e-11 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10041120 [exp] 58 / 3e-09 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10027398 [exp] 44 / 0.0002 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10004806 [exp] 43 / 0.0003 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10031672 [exp] 43 / 0.0004 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1) Lus10033504 [exp] 42 / 0.0004 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G105800.2 pacid=42775381 polypeptide=Potri.015G105800.2.p locus=Potri.015G105800 ID=Potri.015G105800.2.v4.1 annot-version=v4.1 ATGGTGTCAGAGTCAAATGATGGACAAGAAACACAGGAATTGTCTAGACCCAACGGAGTTCGTAAAGAACAAGCACTAGATGTGGATGACAAAACTAAAA CAAGACATCCTCGATGGACTAGGCAAGAAACTTTTGTCCTCATTGAGAGCAAGAAGGTTGTAGAGAACCGATTTCAATGGAGTCGCAGATCCACTTCAGC CTTGGGATCAGATCAGATTGAATCCAAGTGGGATTCAGTTTCATCATATTGTAGTCAGCACGGTGTGAACCGAGGACCTGTTCAATGCCGGAAAAGATGG GGAAACATGTTATGTGATTTTAAGAAGATAAAAACATGGGAGTCTCAGCAGATGAACGAGACTGAATCATTTTGGATGATGAGGAATGAGTTGAGGAGAG AAAGGAAATTGCCCAGTTTCTTTGACAAGGAAGTTTACTATGTCTTGGATGGGAGGGTGATCACTACTGATGCAATTCCATTGTCACAAATCACTTTCAA GAAACAAATGGATTGCATTGATAGAGACGAGGCAGCAACAGCGGAGGAAGAGGAGGAGGAACATGAATACACCGAGGCAAATCTTGATAGCAGTCAATGT GCTAGAGCAGAAGATGGTTTATTTCTGGAATGGGAACAACCTGGACAGGACAAAACTTACTGGAGCTCCAAGAAGGAAACTACAGCAACTGGGAATCTCA GAAAGACACGGGCTAATCCATTGCCCATATCATCAGTGCGTGCAGGTACAACCAAAAAACAAAATCTAGGAACTAAAACAAGGAAAGGATCGATGTCTAG GGAGGGGAAGAAGAGGCGCTTATCATCAGATGAAAGTGAGGACCCTGATCTTGAGGATAGATTGATCAAAGTTTTAGGGAGGAACATGAGCATGCTGAAT TCCCAACTAAAAGCTCAAAATATTAATTGTCAGCTGGATAGAGAGCAAAGGAAGGACCATAATGACAGCTTAGTCAGAGCTCTCAATAAGCTCACAGATG CTATAGTAAAAATTGCTGATAAGTTATAA
AA sequence Show only first row Show all	>Potri.015G105800.2 pacid=42775381 polypeptide=Potri.015G105800.2.p locus=Potri.015G105800 ID=Potri.015G105800.2.v4.1 annot-version=v4.1 MVSESNDGQETQELSRPNGVRKEQALDVDDKTKTRHPRWTRQETFVLIESKKVVENRFQWSRRSTSALGSDQIESKWDSVSSYCSQHGVNRGPVQCRKRW GNMLCDFKKIKTWESQQMNETESFWMMRNELRRERKLPSFFDKEVYYVLDGRVITTDAIPLSQITFKKQMDCIDRDEAATAEEEEEEHEYTEANLDSSQC ARAEDGLFLEWEQPGQDKTYWSSKKETTATGNLRKTRANPLPISSVRAGTTKKQNLGTKTRKGSMSREGKKRRLSSDESEDPDLEDRLIKVLGRNMSMLN SQLKAQNINCQLDREQRKDHNDSLVRALNKLTDAIVKIADKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.015G105800 [exp]	0	1
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.001G396300 [exp]	16.73	0.8055
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	18.97	0.8066
					Potri.010G199150 [exp]	29.18	0.7924
					Potri.006G216950 [exp]	31.63	0.7923
AT3G30387			Protein of unknown function (D...		Potri.004G110681 [exp]	35.62	0.7883
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	45.00	0.6872
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013200 [exp]	45.89	0.7825
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.002G070401 [exp]	47.11	0.7395
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Potri.010G055100 [exp]	52.24	0.6908	MAD2.2
					Potri.013G066750 [exp]	56.31	0.7747

Compare expression of checked genes

Potri.015G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.