Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50930 140 / 4e-42 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022425 [exp] 121 / 4e-36 AT5G50930 155 / 3e-48 Histone superfamily protein (.1) Lus10016731 [exp] 37 / 0.0008 AT5G50930 58 / 2e-11 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF15630 [poplar] [flax] CENP-S CENP-S protein
Representative CDS sequence Show only first row Show all	>Potri.015G105900.1 pacid=42774992 polypeptide=Potri.015G105900.1.p locus=Potri.015G105900 ID=Potri.015G105900.1.v4.1 annot-version=v4.1 ATGGAAGGGGGGAATGGAAACGAGGTAGAAAGAGAAGAAGATGATTCCGTGAGCGATATTCTTCAAGACCGATTTAGACTCTCAGCCATATCCATTGCCG AGAATGAAGCTAAGAAAAATGGCGTGGAGATATCTGAACCAATAACTTCTTGCATTGCTGATTTGGCCCTTAATTATACAGAACAACTTGCGAAGGAACT TGAGGCATTTGCACAGCATGCCGGTCGTAAATCTGTCAACATGGAAGATGTCATACTTTCTGCTCACAGAAATGAACATCTTACCGCCTTATTGAGGTCA TTTTGCAATGATCTGAAAGAAAAAGAGCCCCAATCTGAGAGAAAGCGGAGGAAAACATCAAAAAAGGAAGATAAAGCCACTACAAGTGCTGTGGAAAACC AAACTAAGCAAAAAGAAGTCTCCAAAAAGACCGCTGATTCTGGTCTTTATCTATAG
AA sequence Show only first row Show all	>Potri.015G105900.1 pacid=42774992 polypeptide=Potri.015G105900.1.p locus=Potri.015G105900 ID=Potri.015G105900.1.v4.1 annot-version=v4.1 MEGGNGNEVEREEDDSVSDILQDRFRLSAISIAENEAKKNGVEISEPITSCIADLALNYTEQLAKELEAFAQHAGRKSVNMEDVILSAHRNEHLTALLRS FCNDLKEKEPQSERKRRKTSKKEDKATTSAVENQTKQKEVSKKTADSGLYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50930			Histone superfamily protein (....		Potri.015G105900 [exp]	0	1
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.003G080400 [exp]	4.00	0.7288
					Potri.001G142300 [exp]	4.58	0.7412
AT4G25433			peptidoglycan-binding LysM dom...		Potri.015G137500 [exp]	9.79	0.6608
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	16.06	0.7350
AT1G18440			Peptidyl-tRNA hydrolase family...		Potri.012G061100 [exp]	16.79	0.7172
AT2G44065			Ribosomal protein L2 family (....		Potri.007G142200 [exp]	19.77	0.6707
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Potri.004G200800 [exp]	23.87	0.6100	2,Pt-E2F1.2
AT3G24730			mRNA splicing factor, thioredo...		Potri.001G287600 [exp]	38.78	0.6102
AT1G28540			unknown protein		Potri.004G051300 [exp]	39.79	0.5735
AT1G33810			unknown protein		Potri.019G076400 [exp]	52.91	0.6862

Compare expression of checked genes

Potri.015G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.